Ccau015338.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- -
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000197.1:3390237-3390665[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.9e-11 8.2e-08 32.4 4.7 3 68 48 117 46 119 0.83
Sequence Information
- Coding Sequence
- ATGGATGTTCAATTGAATCCACCAATCGGTCAAGATGATTATGTTGCCTACGTTGAATATGACAATGATTCGGCTACGACGGCCACGCTGGAGGAGCGTAATGGTAAGCCACAGTTGCGCTTTTTCAGCGTAGGTCCAGCTACCTATCGTGTTAATTGCCCGCTCTGCCGCAAAGATGCACGCACTGAGACCGTGGAAATGAGCGGTGCTTTGGGACAGCTAAGTTGTTTGCTCTCCACCCTGTCATGCTGCTTTCCCATTTTTGCGCTGGCTGGAGTCTATACATGTCTGCAGGGTCGGCTGAAGAGCAAACGGGTCTTCTGCAGCACTTGTGGCGGACATTTAGGCTTTTTCTGGCGCCACACCTAA
- Protein Sequence
- MDVQLNPPIGQDDYVAYVEYDNDSATTATLEERNGKPQLRFFSVGPATYRVNCPLCRKDARTETVEMSGALGQLSCLLSTLSCCFPIFALAGVYTCLQGRLKSKRVFCSTCGGHLGFFWRHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00338000; iTF_00336395; iTF_00338815; iTF_00339575; iTF_00804861; iTF_00359898;
- 90% Identity
- -
- 80% Identity
- -