Ccau014587.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- dmd-4
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000189.1:2591912-2598132[+]
Transcription Factor Domain
- TF Family
- DM
- Domain
- DM domain
- PFAM
- PF00751
- TF Group
- Zinc-Coordinating Group
- Description
- The DM domain is named after dsx and mab-3 [2]. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4 [1]. The dsx DM domain has been shown to dimerise and bind palindromic DNA [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-25 5.1e-22 77.6 9.3 1 47 39 85 39 85 0.98 2 2 0.66 3.2e+03 -1.8 0.5 24 31 303 310 299 314 0.72
Sequence Information
- Coding Sequence
- ATGTCCACTAATGATGCTGCGCCAATTGGCGAGTTGACAGTTAAACGTTCGCGTAACACAGTCGGTGCCAAAGGACTAAAACCTCTTGAGTCTCAGGCATCAAAAATCTCGAATCGTGTGCCAAAATGTGCGCGGTGCCGTAATCACGGCATTATATCTGAATTGCGAGGACACAAGAAGCTATGCACCTATAAGAATTGTAAATGCGCAAAGTGTGTGCTGATATTTGAGAGGCAACGAATAATGGCTGCACAGGTTGCCCTCAAGCGTCAGCAGGCTGTGGAAGATGCGATTGCTTTGCGCTTGGTCTCCACCAAGACAGGCCGCAAAATCGATGCATTGCCGCCGGGCAGCATATTTGGTCTAACGGTTACAGAGCCACGCGAACTATCATTGACTgagcaggaacaacaacaccagcagcagcagattgAAGCGCAGCAAGCGTCAGCTCAGCAACAGCTGGAGGAATCAGCTAACGTGGCTCAAGATTTGAGCGCTACACGGCGGGAAATCAGTTCCAACGTGTCCCAAGCGGCCATTGATATGTTGGCGCAATTGTTTCCACAGCGTAAGAGATCTGTGCTGGAATTGGTCTTGAAGCGTTGCGATTTGGATTTGATTCGCGCCATAGAGAATGTGTCGCCGCCATCGGCAGCTATGACAACGCAGTTGCCAGCACTGGAAGCAGCGCAGCCGGCATTGCAACTTGCCAGCTTGCCACAGCGTAACAGCGCCTTTAAGCCGGTGATTGCTGAGCAGtATGGCAAGCCCCCGCCACTGGACCTAAAGTCCAATCCATTCGGCAGCGCTGCCTCGACTGCAATTTGCACATATCCCAAGTGGTTTGTACCTTTATCCTTTCCGGTTACCATGGGACATCTATCAAATATGGCGCCACCGCGTTGCACCTTGCCCAACTGCGCCTGCCTGGAAACCTATCAGTTTCACTAA
- Protein Sequence
- MSTNDAAPIGELTVKRSRNTVGAKGLKPLESQASKISNRVPKCARCRNHGIISELRGHKKLCTYKNCKCAKCVLIFERQRIMAAQVALKRQQAVEDAIALRLVSTKTGRKIDALPPGSIFGLTVTEPRELSLTEQEQQHQQQQIEAQQASAQQQLEESANVAQDLSATRREISSNVSQAAIDMLAQLFPQRKRSVLELVLKRCDLDLIRAIENVSPPSAAMTTQLPALEAAQPALQLASLPQRNSAFKPVIAEQYGKPPPLDLKSNPFGSAASTAICTYPKWFVPLSFPVTMGHLSNMAPPRCTLPNCACLETYQFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00335915; iTF_00338355; iTF_00337542; iTF_00339168;
- 90% Identity
- -
- 80% Identity
- -