Ccau007354.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- MBD-R2
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000138.1:601503-604016[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-17 2.6e-14 52.7 0.0 4 75 239 308 236 310 0.89 2 2 2 2.4e+03 -1.7 0.0 35 74 632 672 628 675 0.66
Sequence Information
- Coding Sequence
- ATGGGTCGTCGTTGTTGCGTAGCCACGTGCCCCTCCACCAACCGAATGCCGATACATGGTGGTGTAACCTATCATACATTTCCCTTGGACCGCGCCGTTCGCGCCATTTGGATCAAAAACTCGCGCATTAGTCTGGAACGTCAGATTACTAGAAACGTGCTTGTTTGTTCACGCCATTTCTGTGCCTCTGACTTTCACAACGACCGTAAAGGCAAACATTTGCTTAATCCGCGCGTCTTTCCCACTGTATTTCCTTGGGGCAAAATGAATGCTTCTCAAATCGAGGCTGACCGTCGGACTTTGGAGCAAGATCCGGCAGACGGCGCAGCCAGGAGGAGCAACACGGAAGTTGTCATTAGAGCCGAAACGTCTCAGCCCAACGCAGTAGCGAATGTGGCTAAATTAGAGGAAGATACAGCCAAAGCTGTAGAGGGAAAAGTCAGTGAAGCTACTACTGCTTCAGAAACAAATCCCATATATGGGCCACTTACTAATTCCATCATTGGAGGAGATGCGGAAGTTTTAAACAGCAATGGTATGGGTATGTTGTTGAAactgttttatttgttattagttttattatttctaGTATATTTTGCTGCACTAGGTCTGCAAAAAATACCTATCGAAGGCGAATGGGCGTGCCACTGGGTAAACGATCAACCCGTAGGCATGGAGGGTTCTTTCATTGTTGGCGGGCAACGCAAGCCCACAGTCATTGTTCAGGACTGCCGTTTGCCATTGGGCTGGAAAAAACACATGTATCAGAGCTCAAATGTGTTAGGAAAATGGGAAGTCATTCTGGTCTCACCTAGCGGCAAGCACTTTCGTTCCGAGACTGATCTGAAGCCGTATCTTGATTCTCAAGGCCTCGGTTATAGTCCGGACATATATGATTTCAGCATTCACCTTCAACGCGCTAAAGACATTAATGCCTATGTCTATACAAACGACTTCAGTCCACAACAGCCACACAAGCCTAATCCTGTGTCACTAGATACGTCGGGCCCGCTAAATCATATTGCTGGCAAATTACCGGCACTTCCAGCTACGTCGCTATGGTCGGTCACTCCACGCGCGGATACTCTGAATATGAACACACTAGTTGTGTCCTTAATGCCGCCAGCAGAGCTAATGTCTTCACAAGGAAGCGCAGCAAAGCACGCAGAGTCTTCTGCAGTTCCATCTGCATTTGGCGAATTAGTGGAGAAAAATTATGCTTTCATTGATGGTTTGAGGGTTCAAATAACTAACAGTTTGTTCGTCTGCCCCAAAGAGGGCTGCGGAAAGACCTATAGCAAGGAGGACTTTCTAAAAATACACATACGCCACTACCACTTGGAGTTTGCAGAaTATGTGAGCCACGGTCCCAGCGAGGTAAAGAAAAGACGTTTGGACATTTTCTCTAGTGACTCTCCAGCCACGTTCGATCCCATTTCATCACCTTCTAAAGATCACGGCGTTATTGATGCAGCACTGCCGTCAATCGGCCAACCGTCGCAAGGAAACGGCGAAATCATTCGCATTGAGCCCATGGAGAAAGACGACATCATTAACTGCATATGCAAGCATGGCGGAGCAGACGGCCTTATGATACAGTGCGAGTTGTGCCTCTGCTGGCAACACGGTGACTGCAATGGCATTCGCAAGGAGTCGGACGTACCAGGAAAATATGTCTGCTACATTTGCCGCAATCCGCCGCGTCAAGACCGGCTGTTCGAAGGCAAGCTCCCGACGGCAAGCTACCACATGGCCAATCCTCAGGTTGAAAAGGAGTGCTCTTTATTAGCACGATCTCACATGCTCACTCGTAATCTTTTCGATACCAAGCACTCAATGTATGCACTGCTGTTAAGTATCAATATTGCCAAGAAACGCTGCCATCCTAAGTTGTATTTAAGCCCGAATAATGAACAACTGAAGATGCCACATGTGCCACAGCCAGAGGCCGCTATTGATCGAAAGCAGATTCAGAATCATTTTATTGAGCATATAAAAGTGCAGCAGAGATTGGTTTTGGATCGTCTTAACGATATTGAGGCCAAGTTGGACGaaCTCGAAAAAGAGGACGTCTTGAAAGACGCAACTGATGCGACAATTGAAGAAGCCTTGACCGTTTTTATAAAAGATCTTGAGATGCTTCATCGTCTGGCTAACCTTAACATTGTGACCAATATAAAGATGGCCTTAAAAGAGCAAGAAGCAGGTTCTGCCACCTCTATGATCTaa
- Protein Sequence
- MGRRCCVATCPSTNRMPIHGGVTYHTFPLDRAVRAIWIKNSRISLERQITRNVLVCSRHFCASDFHNDRKGKHLLNPRVFPTVFPWGKMNASQIEADRRTLEQDPADGAARRSNTEVVIRAETSQPNAVANVAKLEEDTAKAVEGKVSEATTASETNPIYGPLTNSIIGGDAEVLNSNGMGMLLKLFYLLLVLLFLVYFAALGLQKIPIEGEWACHWVNDQPVGMEGSFIVGGQRKPTVIVQDCRLPLGWKKHMYQSSNVLGKWEVILVSPSGKHFRSETDLKPYLDSQGLGYSPDIYDFSIHLQRAKDINAYVYTNDFSPQQPHKPNPVSLDTSGPLNHIAGKLPALPATSLWSVTPRADTLNMNTLVVSLMPPAELMSSQGSAAKHAESSAVPSAFGELVEKNYAFIDGLRVQITNSLFVCPKEGCGKTYSKEDFLKIHIRHYHLEFAEYVSHGPSEVKKRRLDIFSSDSPATFDPISSPSKDHGVIDAALPSIGQPSQGNGEIIRIEPMEKDDIINCICKHGGADGLMIQCELCLCWQHGDCNGIRKESDVPGKYVCYICRNPPRQDRLFEGKLPTASYHMANPQVEKECSLLARSHMLTRNLFDTKHSMYALLLSINIAKKRCHPKLYLSPNNEQLKMPHVPQPEAAIDRKQIQNHFIEHIKVQQRLVLDRLNDIEAKLDELEKEDVLKDATDATIEEALTVFIKDLEMLHRLANLNIVTNIKMALKEQEAGSATSMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336781;
- 90% Identity
- iTF_00336781;
- 80% Identity
- iTF_00336781;