Cfes020576.1
Basic Information
- Insect
- Chrysotoxum festivum
- Gene Symbol
- -
- Assembly
- GCA_963931855.1
- Location
- OZ007554.1:256664224-256666310[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.67 8.7e+03 -1.3 0.0 26 48 249 272 240 274 0.80 2 4 0.00031 4 9.4 0.0 22 52 382 412 377 416 0.92 3 4 0.0059 76 5.3 0.0 22 51 457 486 452 488 0.89 4 4 0.00027 3.5 9.6 0.1 21 45 542 566 539 574 0.89
Sequence Information
- Coding Sequence
- ATGGGCGATGCAGATTATACCTGCCGAACTTGTGGCAAAAGTTCTGAACAAGAAGACAACACTGATCTGTTTCCTTTGTTCACATCCACCGAATATCACAATGAACTTAAAATGATATTATCAGAATTCGAAATATGGAATCTTAATATATCAGAAAATGACGGCTTACCGCAAAAAATATGCCTAACGTGTTTCGATAGTTTTTGTCAAATTCACAACTTCCGCATTATGTGTGAAGAAGCTCAAATGAATTTTGGCGAACTATGCACTGGGTTGGATATAATAATCAAAATGGAACCAGAATTCAATGGCGATATTGATGACGATTTTCCGGAGGACTTTCAAGGTGAACAAACTATAACCATACAAGAACACTATCAATTTCCTCGTGAGGCCCGCTCCAAAGTATCAGAACCACCTGCCGAGTCAAAACAAAGAACAGATcagaaattagaaaaattatacGCTGCCAATGAATATGGAGAAATTCAGGATATAAATGACAAAGAAAGGGCTCGACAAGAGGAGATTGATGAAATGAATGCAGAAGTTCCCGAATTCAAAGCGCATAGATGTGAATTTTGCATGGATGTAGTGAGTTTTGATGATCCCGACCTCTTAAATGATCATTACAACGTGTTACACAGCACCGATTTACCATACTTATGTCCCAAATGTGACAAATGTTTTGACAGCAAAGTAAAGAGAAACATTCATGCCAAATCGCATTATCGTATCTTGGTTGAGTGTGATATTTGCGGCAAGAAGGTAAGAGGTGGTAAGCCAATGATGGCTCAGCATAATGAGTTGCATCACATTGAAATTGACCGTGAGTGCCTAACATGCGGTAAAATATTTCCGAAAGCTActttgaaaacatttaattaTCATATGAGTTGGCATGACGATGCCAAATTGCACAAGTGTAAATATTGTGAAAAGAAATTTATCCAAATAACACATTTAGTGGTTCACGAGAAATCCCATACGGGAGCTTGTGTCTATCAGTGTTATGAGTGTGGAATAGGATTTGCAAATGAAGATTTACTCAACGAACACAATAAGAAGCAGGAACACAAAAATATAGATATTCCGGATGAAGCTATGCaaatgcaTGAAGCAATTCCAAAAACTAACCTGAATAAAAAACCAAGCCGTTGTGAAATCTGTGACAAAACCTTTCGATCAGTAATAAGTCTGCGTATGCACAGTTACAAAAAACATGGAGCTAAACCCACACCCGGtgtcaaagaaataataaaacagaaacaaaatctCGTGATCGTTAAGCCATTTAAATGCAGCAAATGCACAGAATCATTTCTAATGCACACGCAGTTAGTGATGCACTTGAAAAAACACGATGAGAACAGACCTTACAAATGCCCAACAtgctcgaaaaattttaaaaaagataaatatttaaaGTCTCACATAGATACAGttcatttgaagaaaaaagaacaTGTTTGTTCGACGTGTGGGTGGGCATTTGTATATAAGCAAAGTCTAGATGAACACATTGCTACAAAACACAGTAAAACAAAAGACTTCAAGTGCGAAGTTTGTGAAAAAGCATTTGCATTTGAGAAGGCATTGAAGAATCATATGCTAATACATAAAGAAGAAAAGCCGTTTGCGTGTACGGTATGCAGCAAAAGCTTCCGCCAATCGACTGCTCTTAAAgCACACGTAAAGTCACATCAAAAGAAACACGCGAAACTCTCTTCAAACACTGTTATTGATCCGATGgaggaatttaaaaacgatgaCATGGAATAA
- Protein Sequence
- MGDADYTCRTCGKSSEQEDNTDLFPLFTSTEYHNELKMILSEFEIWNLNISENDGLPQKICLTCFDSFCQIHNFRIMCEEAQMNFGELCTGLDIIIKMEPEFNGDIDDDFPEDFQGEQTITIQEHYQFPREARSKVSEPPAESKQRTDQKLEKLYAANEYGEIQDINDKERARQEEIDEMNAEVPEFKAHRCEFCMDVVSFDDPDLLNDHYNVLHSTDLPYLCPKCDKCFDSKVKRNIHAKSHYRILVECDICGKKVRGGKPMMAQHNELHHIEIDRECLTCGKIFPKATLKTFNYHMSWHDDAKLHKCKYCEKKFIQITHLVVHEKSHTGACVYQCYECGIGFANEDLLNEHNKKQEHKNIDIPDEAMQMHEAIPKTNLNKKPSRCEICDKTFRSVISLRMHSYKKHGAKPTPGVKEIIKQKQNLVIVKPFKCSKCTESFLMHTQLVMHLKKHDENRPYKCPTCSKNFKKDKYLKSHIDTVHLKKKEHVCSTCGWAFVYKQSLDEHIATKHSKTKDFKCEVCEKAFAFEKALKNHMLIHKEEKPFACTVCSKSFRQSTALKAHVKSHQKKHAKLSSNTVIDPMEEFKNDDME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694107;
- 90% Identity
- iTF_00335351;
- 80% Identity
- iTF_00335351;