Ccae031509.2
Basic Information
- Insect
- Chrysops caecutiens
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963971475.1
- Location
- OZ020569.1:2368854-2390344[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.8e-112 1.9e-107 360.4 34.3 1 299 255 539 255 540 0.91 2 2 0.18 4.4e+03 -1.9 3.1 136 162 575 601 547 614 0.50
Sequence Information
- Coding Sequence
- ATGGAGAGCCCCGGCGCTGTTGGAAGGCGTCGTGGAAACTCTCGCGTCAATGCCGAGGACCAAGCCCTGGACCAGATTGCCAAAGAGGTAAGTCAAGGATTTGAATTCAAACGTGACAAAAATTACGAAGTTGTTGTGAATCGTGTTAATAGttttgaagaagaagagaatgGTGAAGAGTTTGATTTTAGTGAAGATGATTTAAAGGATTTAGATAGTGATATTGTTGAATgcaaaaatgatataaattcgaataaaatttacaagaaAACTAGTGATACCAGCTACGAACCGAATGTTACAGTGAACAGCTCCGAAATGAGTAGTGATTATGAAGATTCTGTGTCACATCCAGATTTCTTATCATCACCTCCAGCTACACTTCATAGAAAAATGCTGTTACCTTCAGCACTTGATCAGAGTGTTGTTGATGAAGATCATGTTGATAATGCCAAGATGAATGGTGATCAAATTCCATTTGTCGAAACTATCAACAGTTCCTTAATCAATGGAGATGAtgttaaacaaacaaaccaaGTTCCTAGCGAAGAATTATCTACTTGCCCAGCCGAATCTACTTTAAACGATAACGACAACAACAATAgtgttgaaattattcaaaatggagAAAAATGTTGTGATAACAAATCAGGAGATGTCGCTGCTGATGAAGATGCTGATGCCGAGGAAGATGATGTCTTTTATAGTGACGAAGGCGAAGATGGAATTATTGTGAATTTTCTGGATAAAGCTAATGAAATTGCCGAAGCAAGACTTGCAGCAAGACGGCAGGCACGTGCAGAGGCACGTGAAATTCGTATGCGTGAACTGGAACGACAACAAAAGGAGCAAGAACAGAATGCGGATAGAGTGTTCGATATGCAAACAGCAGCTGGAATCGATCCTTTGTCAAGATCTCGTCTTGCAATATCAAATAGTTCTGCACGAGGTACTTCAATGTCATCTAGAAGAAGTAGTGAAGATTCATTGGAGGAAGAGGgaagaagccttcgtgatattAGACATGAActcaaaGAAGTGGAGGAACGCTTTAGGAAAGCGATGATAGCTAATGCACAACTAGACAATGAACGAGCTTCCCAAACttatcaaattcaattgttaAAAGATAAACTGGAGGATATGGAAGAAGCTTATGCCCAGCTTCAACGGGaatacaaagaaaaatgtCGAGATTATAATGCATTAAAACGAAATTATGATAAATTAGatgaagaattaaaattagttCGTGGGCAATTAGATGAACGAGATACTCTTATATCTGAACAGGGTTTAGTTATAGTGTTGGTAGAAAATGAGGATGGATCAGATGCCAAACGTGCTCTAGTCACTATGGAGAACGCACAATTATTAGGATCCGTTCAAGGTTCCTTAGATGTTCGACTTAAAAAATTCACcgaagaaaaacaacaactcCAAAAAGAAGTTCAAAATCTTCAACAACAAGTAACTGAGCTAAAGTCACAAGGACGAAGAGGTGGTTCTATGAATGGTCCAAtgggtgatgatgatgattatgacGCACAGAGAGAAGCGAATAAAACGATTGCcgattataaatataaattacaaaaagctGAACAGGAAATAGCTAGTCTTCAAGCCAGTTTGGCACGATCTGAAACCCAAGTAATACGGTATAAGAGTACGTCTGATGCTGCTGAAAAGGCTGAAGCAGATCTTAAAATTGAACGTAGAAAATTGCAACGTGAGAATCGAGAAGCAATGGAACGACTTGAGGAGCTTGAAACAGCCAATAACCATTTACTGAAAAGATTAGATAAACTAAAAAATGCTAAAAGTGCTCTGCTTAAAGACCTCTGA
- Protein Sequence
- MESPGAVGRRRGNSRVNAEDQALDQIAKEVSQGFEFKRDKNYEVVVNRVNSFEEEENGEEFDFSEDDLKDLDSDIVECKNDINSNKIYKKTSDTSYEPNVTVNSSEMSSDYEDSVSHPDFLSSPPATLHRKMLLPSALDQSVVDEDHVDNAKMNGDQIPFVETINSSLINGDDVKQTNQVPSEELSTCPAESTLNDNDNNNSVEIIQNGEKCCDNKSGDVAADEDADAEEDDVFYSDEGEDGIIVNFLDKANEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLSRSRLAISNSSARGTSMSSRRSSEDSLEEEGRSLRDIRHELKEVEERFRKAMIANAQLDNERASQTYQIQLLKDKLEDMEEAYAQLQREYKEKCRDYNALKRNYDKLDEELKLVRGQLDERDTLISEQGLVIVLVENEDGSDAKRALVTMENAQLLGSVQGSLDVRLKKFTEEKQQLQKEVQNLQQQVTELKSQGRRGGSMNGPMGDDDDYDAQREANKTIADYKYKLQKAEQEIASLQASLARSETQVIRYKSTSDAAEKAEADLKIERRKLQRENREAMERLEELETANNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -