Basic Information

Insect: Chrysops caecutiens
Gene Symbol: rfx7.L
Assembly: GCA_963971475.1
Location: OZ020570.1:23211153-23215375[+]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 6.4e-32 1.5e-27 97.3 0.0 3 77 157 231 155 233 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	6.4e-32	1.5e-27	97.3	0.0	3	77	157	231	155	233	0.97

Sequence Information

Coding Sequence: ATGTCGGAAGACAATGTTTTTAGTCGTTGGAAGCGTGAGGCTAGCGGATCAAGTAATGCTGTTGGACCTCTATTTACTAAAGCTGACGTGATAGGAGAagcatcatcgtcatcatcacaATCAATTTCGGTACAATCGAATATACCAATGGATATGCTACCACACCAACAGCAATTGGATTTGCAAAAGATTTCGCatatatcaaaaataaatagtaTAGCTAAGCTCACTGCTTTTGAAGGAATATCACAAATGCCAGAAAAAGATCGACTGAGAAAAGTACAACAGATTGTTGAAGCTGGTATAGGGGACCATGCCAAACagcaaattttacaaattttagaCAAGATTTCTCTACTTAAACCTCCTGAAAGATTACTATTGTACCTGCGGATGCCTGGAGGAACACCCGAAACTGATCCACTGCGGCAGCCACAAAACCCATTGGGAACAAGATCCGAAATAAATCACACTATAAATTGGGTTAGATCACATTTGGAACATGATCCAAAAGTGTCTATACCGAAACAAGATGTTTACAATGATTATGAagCTTATTGTGAACGTGTGGATATCAAACCACTTTCGACAGCTGATTTTGGAAAAGTTATGAAGCAGGTTTTCCCTGAAATTCGACCACGTCGCCTTGGCACAAGAGGTCATTCAAGATATTGCTATGCAGCTATGAGAAAAGCTACTAAATTAGATTCACCACGTTTACCATCTTTGGGCACAGAAGAAAATACTCCGGATTATGGGACAACTGATGAAGattcatggaaaattattaaattgtgGGTAGAAAGCTTGCTAAATTCTTCGTTTAACTGCTTGAAAGATTTAGCTACGCATATAACTAAACACAATTTAAACTCTCCGGCAAGTAACAGTTCCAGACTATTATTGCAAAAGAGGCTACTTCAAAAAGATAATAAAGAAAAGCGAAAATTCAATGAATCAGGTCCTTTGAAAAAAAGACGAAAAAAGAAACGCAGGAATTCGTCTTCTTCCGAATCAAATCTTCAGACACAAGTACCTTCGGAAGTGTCATTGGATGGATCAACGAAGTGCATTAAAAGTGAAATAGTTGAGCCGTGTCAAAATAAAAGTCAAGTACAACCTCCAGTCACTGGACAAATGCAGTCACAACAAACTCTACCAATGAACCTAACCGCAGATCAAGATAATGTCAGAAAAATACAAGGTACAAATTTAACCTGTGATAATAACCTAGTCGTTGGCTGCACTGCCAAAAGTCTTGTTGTGCAAAACATACCTTCTTTACCGGATGCAATGGCAACGAATTCTAATTGCAATATTCCAGCACCAACTTCACCCAATTTAATCAAACTTGAACTTGAAActataaaagaagaaatatcAGATGAATATAATCCGAACATATTTTGCAAAAAAGTACGACAAGCTCAACAAGCCAAAGGTTTGTGGAGTCCAGCGAATAATGTTAGTGTACCGATTGTACAAACTCCTTTGTTGCCAACACCTGTACAAGAGAATATAGTACATGAGTTTAGTCGACCTGCAAATACAATTTTAGGTCCGCCTGTGCACATAGATTCAATGCCACAACCATCTATATGTCCACCATTTAAAAGATTAACAACAATGTGTTCTAGTGAGAGTGATAACCGTATCCCATCTGGCTTAAAAAGCCATTCTGGAAACATACCAACACGTGCAAAAAAATTACGCAATATACATAAACAAGAAGCCTTGAACGAAATGAATAGCCATACAACCGCAACTGGTGAACAGGGTACAGAAAAAGACGTTCTACCAGAAAATTTAGGTATACCTCGTGAAAGAGTCATAAGCATTTGCAATATGGACAAACATGAACTTGATGATTACTTAAATGAAGATGAGAATTCTCAAGATCAAGAAGCTGAGCTTTTGCAATATTTTCAGCAGGAAGAAGCAGGAAATATTAAAGTCGAAGAAGTGGCAAATTCGAATGCAAATCAGCAGCCATCTAATTATCCAATGTTGGAAAACTATCAGCTTTATGGATGTCCAAAGAGTGATCGCAAGGGAGCAACAAATGCTGATGGTGATGAAATCACTCAATTACGTTTTTATTTAcatcaaaatttacaaaacagtAATGGAACGAATAGTAACACTAACAACAAAAACATGTATGGCGCGCAAAATATGGAAACATCCACATCAGAGGATACAGGAAATTTTAGTAATTTATATTCAGAAGGATCTGCTTCAGCATCTTTAGCTTTAATGTCACAGCGTCATCTGTCCGTAGTTCCAGAAGATCCAATAAATTTAAGATGCTGCAGTGGAAATTTACCTACAAATAATCATGGTCCATCTAATAACTCAGCACTACGTGGTCCTCggcgaaaaataaatttaaatgctCGATCGTGTGTGCCAAATAGTCCAAACACACGTCGAAAGCATTTTAGTTTTGTTCCAATATCGCCAAATATGAATACAACCCATAGTCACAATAATACAGTAGATTACAGTCCATTTGTAAGTCCACGTTCCACACCAATTGTTCGCAAACCACCCTTGAATAAGCAAAACTCTCTCCCAATTTCGGATCTCAATCAAGTTGCTGAAAATCCCCCTGTGCCATCACATGGATCATCAACTACGTTCCAGAATATTTTAAGTGCGTCCGCTCCTCCCAGTCCTTCTCTAGTTCAACAACGATTTCGATTTGCAACATCAACTACAACCGGAACCTCTCACAATATACCTCTTTCAAATACCAGTGAACAATTCAATCAATTGCAATCAGTAAACGTTCAAAATCGTAATCAAGGACTAGCAATGGACGGAATTCCGGAATCCCGTTCACAAAGTGTTCCCTTACACTGTCGTAACAGTCCAGCATTTAACAATTCAAATAACTTTCCGGGATTTTCTTCAACATGCAGCTCAGTGAGGCAAACTCCAGTTCCACCAGATTTCAACGATTTTAATGATCCTACAATTCTAGACATATTCTCAGATGCCTCACAAACTCAAGCAGTTAAATTAGAATCACCGGAAATGGCTTCATCTTTACTTGTTGATGCTGATATAGCGTCCACAGAATCTGAAATTGGAATGAGTGATTTATTAACAGGTGACTTTGTTCCCAAGAGCACAGCATCTGTTAATAACATATCAAGATCTGTACCATCTACACCGCTACCTATTTCTGGATACAAATGTAGTAATGTAACCTTAAATGCTCAAGATGCagacaaaacaaacaaaatctaTGATATGTCAAAGTCTGTGCCAACAACCCCAGTTGCAATGAATGTTGGTCCATTTCGATATAGTCCGGAAGTGAACCGTGATTTTCTTATTAATGGTAACAGTGTTGAATCAACAAAGAAATCCTCTTTTTATAGTAGTCAGCAATCGCAACAACAATTATCACAAGGTAATACGAATGATTCAGTTAGAGATAAAGTTGTAACTACCTCACTATCCGAAGGAATTGACGAGCTTTCAAATTTTGGTGTAGTATCAGAATCAATATCTATTATTGGTTCTGATCTTTTGAACaatatataa
Protein Sequence: MSEDNVFSRWKREASGSSNAVGPLFTKADVIGEASSSSSQSISVQSNIPMDMLPHQQQLDLQKISHISKINSIAKLTAFEGISQMPEKDRLRKVQQIVEAGIGDHAKQQILQILDKISLLKPPERLLLYLRMPGGTPETDPLRQPQNPLGTRSEINHTINWVRSHLEHDPKVSIPKQDVYNDYEAYCERVDIKPLSTADFGKVMKQVFPEIRPRRLGTRGHSRYCYAAMRKATKLDSPRLPSLGTEENTPDYGTTDEDSWKIIKLWVESLLNSSFNCLKDLATHITKHNLNSPASNSSRLLLQKRLLQKDNKEKRKFNESGPLKKRRKKKRRNSSSSESNLQTQVPSEVSLDGSTKCIKSEIVEPCQNKSQVQPPVTGQMQSQQTLPMNLTADQDNVRKIQGTNLTCDNNLVVGCTAKSLVVQNIPSLPDAMATNSNCNIPAPTSPNLIKLELETIKEEISDEYNPNIFCKKVRQAQQAKGLWSPANNVSVPIVQTPLLPTPVQENIVHEFSRPANTILGPPVHIDSMPQPSICPPFKRLTTMCSSESDNRIPSGLKSHSGNIPTRAKKLRNIHKQEALNEMNSHTTATGEQGTEKDVLPENLGIPRERVISICNMDKHELDDYLNEDENSQDQEAELLQYFQQEEAGNIKVEEVANSNANQQPSNYPMLENYQLYGCPKSDRKGATNADGDEITQLRFYLHQNLQNSNGTNSNTNNKNMYGAQNMETSTSEDTGNFSNLYSEGSASASLALMSQRHLSVVPEDPINLRCCSGNLPTNNHGPSNNSALRGPRRKINLNARSCVPNSPNTRRKHFSFVPISPNMNTTHSHNNTVDYSPFVSPRSTPIVRKPPLNKQNSLPISDLNQVAENPPVPSHGSSTTFQNILSASAPPSPSLVQQRFRFATSTTTGTSHNIPLSNTSEQFNQLQSVNVQNRNQGLAMDGIPESRSQSVPLHCRNSPAFNNSNNFPGFSSTCSSVRQTPVPPDFNDFNDPTILDIFSDASQTQAVKLESPEMASSLLVDADIASTESEIGMSDLLTGDFVPKSTASVNNISRSVPSTPLPISGYKCSNVTLNAQDADKTNKIYDMSKSVPTTPVAMNVGPFRYSPEVNRDFLINGNSVESTKKSSFYSSQQSQQQLSQGNTNDSVRDKVVTTSLSEGIDELSNFGVVSESISIIGSDLLNNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -