Ccar022502.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:125028090-125029205[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 3.2 2.2e+03 -0.7 0.1 22 33 65 76 61 89 0.74 2 8 0.0033 2.2 8.8 0.0 21 52 92 123 79 125 0.84 3 8 1.9 1.3e+03 0.0 0.0 22 46 149 173 145 179 0.80 4 8 0.011 7.1 7.2 0.0 20 47 175 202 162 208 0.82 5 8 6.6 4.5e+03 -1.7 0.0 25 46 236 257 228 263 0.74 6 8 0.0083 5.6 7.5 0.0 21 44 260 283 253 291 0.88 7 8 1.6 1.1e+03 0.2 0.1 25 49 291 319 281 320 0.68 8 8 0.18 1.2e+02 3.3 0.1 12 51 307 344 302 346 0.76
Sequence Information
- Coding Sequence
- ATGTCAAATTATTCATTTCATGATGGGAAAAATCCTGTATTTATCAATGTCGAAAATATAAAAATTGAAGAGGGATTACATACAAATGTAACAATTAAACAGGAGATAACAGAAGAAAATGATTCTAATTTCTCCCAAATCGAATATAACCAGAAAATAATTTCAAATTTAAATAAACGATTTGGTACTAAAGAAAAACGATTTACATGTGATATTTGTAATAAAACCTTTACTCACCAAAGTACTTTAGCAATACATAGAAGAATTCATAGTGGAGAAAAACCTTACTCATGTGATTTATGTGATAAAACATTTACTCAGTCAAGCAATTTAACTGAGCATAAACGTATTCATACTGGAGTAAAACCATTTTCATGTGATGTATGTGAAAAAAAATTTTTACGTCTCGATAGTTTGATTAGACATAAACGAATTCATACCGGAGAAAAAGTTTATTCATGCGATGTTTGTACGAAAACATTTACCGAAAAAAGTAATTTAAACAAACATAAAAGAATTCATAGTGGAGAAAAACCTTACTCGTGTGATTTTTGTGATAAATCGTTTGCTCAATCAAGTAATTTAACTGAACATAAACGAATTCATACTGGAGAAAAACCTTTTCCATGTGATGTTTGTGGTAAATGGTTTCCTCGTCCAGATGTTCTGGTAAAACATAAAAGAACGCATACCGGAGAAGATCTTTTATCATGTGATGTTTGTAATAAAACATTTATTGAAAAAAGTAATTTAATTAAACATAAACGTATTCATACGGGAGAAAAACCATTTTCATGTGATGTTTGTGATAAATCATTTACTCAATCGAGCAATTTAACCGAGCATAAACGAATTCATACAGGAGAAAAACTTACTTGTAATTTATGTGATAATGTTTTCACTTATTCAAGTACCTTCACTGAACATAAACGTAGTCATACTGAAGAAAATCATTTTCCATGTGATCTTTGTGACAAAGTTTTCAGTCGTAACAGTAATTTAGTAAATCACAGAAATACTCATTTTGGGAAAAAATGTTTTTTCTGTGATGTTTGTAATAAAAAGTTTTCAAGTGAGAAGTATTTAGCAAAACATAGAAAACTGCATATCGAATAA
- Protein Sequence
- MSNYSFHDGKNPVFINVENIKIEEGLHTNVTIKQEITEENDSNFSQIEYNQKIISNLNKRFGTKEKRFTCDICNKTFTHQSTLAIHRRIHSGEKPYSCDLCDKTFTQSSNLTEHKRIHTGVKPFSCDVCEKKFLRLDSLIRHKRIHTGEKVYSCDVCTKTFTEKSNLNKHKRIHSGEKPYSCDFCDKSFAQSSNLTEHKRIHTGEKPFPCDVCGKWFPRPDVLVKHKRTHTGEDLLSCDVCNKTFIEKSNLIKHKRIHTGEKPFSCDVCDKSFTQSSNLTEHKRIHTGEKLTCNLCDNVFTYSSTFTEHKRSHTEENHFPCDLCDKVFSRNSNLVNHRNTHFGKKCFFCDVCNKKFSSEKYLAKHRKLHIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332811;
- 90% Identity
- iTF_00332811;
- 80% Identity
- iTF_00332811;