Ccar012168.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:95652961-95655452[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 3.1 2.1e+03 -0.7 0.0 22 44 72 94 69 101 0.82 2 8 0.42 2.8e+02 2.1 0.1 18 41 103 126 87 133 0.78 3 8 0.28 1.9e+02 2.7 0.0 21 44 134 157 128 165 0.84 4 8 7.7 5.2e+03 -2.0 0.1 22 36 163 177 156 186 0.75 5 8 0.54 3.7e+02 1.7 0.1 20 43 189 212 173 217 0.78 6 8 3.2e-06 0.0022 18.5 0.1 20 44 217 241 200 249 0.81 7 8 0.4 2.7e+02 2.2 0.0 22 44 247 269 244 273 0.89 8 8 0.0097 6.5 7.3 0.0 21 44 274 297 270 304 0.91
Sequence Information
- Coding Sequence
- ATGGAACCTGGAACGGTTAAAGAAGAAATTGTCCCATTTGAATTGGAGCACGTAGCAATTAAAGAAGAAATATCGGAAGAGATTTTACCTTTTGAACATGTAACAGTTAAAGAAGAAATACCAGAACCAGAGGAATTTGTTGAATATGAACAGCAATTAAATACGGAAATAAATATTCCAGATGTAGTTGTAAATAAACAAATTCACAATCGAGAAAAACAATTTTCATGTGACGTTTGTAATAAAACATATATGCGAAAACAAAATTTAACTGAACACATACGTAGCCATACCGGAGAAAAACGAAAAAATCATGAAGAAAACCCATTTCCATGTGATATTTGTGAGAAAACATTTCGACATGAAAGCAGTTTAATTGTGCATAGACGAATTCACACCGGGGAAAAACCTTATTCATGTGAAATTTGTGATAAAAAATTTAAAATACAAGGTGATTTAACTCGACATAAACGAATACACAGTGACGAAAAATCATTTTCATGTGATATTTGTGAGAAAACATTTCGACATGAAAGTAGTTTTATTGTGCATAGACGAACTCATTCCGGAGAAAAACCGTTTTCGTGTGAAGTGTGCCATAAAAAATTTACCCATCCTAGTAATTTAATTGTTCATAAACGAATTCATACGGGAGAAAAACCTGTATCATGTGATATTTGTTATAAGACATTTAATCAGAAACAAAATTTAAATCGACATAAACTCATACACTTGGGGGAAAAACCATTTTCATGTGATGTGTGTGATAAAAAATTTAATGTATCCAGTCATTTAACTCGACATCAACGTGTTCACACCGGTGAAAAACCATTTTCATGTGACTTTTGTAATAAGACATTTAATCAGAAACAAAATTTAATTAGACATACACCCATTCACACTGGGGAGAGAAAGTTTTCTTGTGAATTTTGTGAAAAAGCATTTAGTCATCTCAGCAATCTTATTGCACATAAACGAATTCATAGCGGATACAACAAATCATTTTCGTGTGAATTTTGTAATAAAACATTTACTCGGAGACAGAATTTAATTCAGCATAGACTAGGTCATATCACAGATTATAGTTTATTACAGAAATAG
- Protein Sequence
- MEPGTVKEEIVPFELEHVAIKEEISEEILPFEHVTVKEEIPEPEEFVEYEQQLNTEINIPDVVVNKQIHNREKQFSCDVCNKTYMRKQNLTEHIRSHTGEKRKNHEENPFPCDICEKTFRHESSLIVHRRIHTGEKPYSCEICDKKFKIQGDLTRHKRIHSDEKSFSCDICEKTFRHESSFIVHRRTHSGEKPFSCEVCHKKFTHPSNLIVHKRIHTGEKPVSCDICYKTFNQKQNLNRHKLIHLGEKPFSCDVCDKKFNVSSHLTRHQRVHTGEKPFSCDFCNKTFNQKQNLIRHTPIHTGERKFSCEFCEKAFSHLSNLIAHKRIHSGYNKSFSCEFCNKTFTRRQNLIQHRLGHITDYSLLQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332887;
- 90% Identity
- iTF_00332887;
- 80% Identity
- iTF_00332887;