Ccar010953.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:2111111-2115309[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0032 2.1 8.9 0.1 20 48 452 480 444 483 0.91 2 3 0.43 2.9e+02 2.1 0.1 27 49 574 597 570 600 0.85 3 3 0.00031 0.21 12.1 0.0 23 48 685 710 682 716 0.92
Sequence Information
- Coding Sequence
- ATGGAATTAAAAGTTGGCTTACAATTTGCAAGCTATGAGGAGCTTACGGATTTTATTCATTTGTACGAAGAGGAAACCAAACAAAAATTATGGAAACGATCGAGTCGAACAATAAAAAGTACAAAAAACTTAAAGAAAAAATTTAATGAAAAAATTCAATATTACGAGATTCAATATTCTTGTATTCATGGTGGTCAACGATTTATATCGAAGAGTAAAGGACTGAAAAAAATTAGTACTCTACGAGTTGATTGTCCGTTTAATATCAAGCTACGAGCCAGCGTAGATGGTCAATTTTTAGAAATTCGTAGTTGCAACGATCAACATGAAAATCATTCAGAATATATGAAACCAGAAAAAGGGGAACGATCAAAAGAAGAGAGACATTCAAGTGAAAGAATAAAAACTCGAACATCAAAATCAGAAAAAAAATCAAAACCACAAAATAATGAAAGTATGAAAGTGGATGAAGTGATTAGCGTGGAGATGCTGTGTCGTTTGTGTGGAAATCGAAGTGAACATTTAATATCGATCTACGAAGGTGAAGGTTTGGAGTATCAACTACAAATGAAAATCAATCGACATTTGCCATTCAGAGTGGAGCGAACAGATACAAACTTACCAAGTAGATGTTGTTATCAATGCGCGAGCACGTTACTCACTTGGCATGACCTGGCAGAGATCAGCATTGAGGCGGATCGACGATTAAAAACACTATTTGGTGCTGTTAAATTAGAAAATTTCGAAGAACTAGAAGATATTACCGAAGAAAAATTTGAAGAATCTAAAAAAAATGAGAATTTCTATAATGTTTCCACAAAAAACAAGCAACAAGATGGATCTGAAACAATTGCTTTCGTCAGCTTTTCATCATTTCACAACGCACAGAAATCTTTGTTATCCAATCAAAATATTGTACCGACATCAACACAGCCTGAAACATGTATTAAAACAGAAGATAACAGCGACTCGGACGATGATAGAGGTGATGTTACAGCTTCACCTTTACCACCTAGTGAAGAAGAAAATGTTCCCCGAAAGAAGCTTTATAGTTGTGACACATGTCAAGAAACATTCAAAACTTTAAAACATTTCAAATCACACTTGGCTGAAACGTTACATAAAACACAAAGTCTACCAAAAGGACGACCTACAAACGAACCCAGGTATTATTGTGAGATTTGTGACTATGGTTTTCCTGAACGAGATCTAATGGTAGAACATCGTGCGAAAGCTCATCAAACATCAAATGAAACGGTTAAGAATGAAAATCACGAGCAAGAATCAAAATCACTTGGAGTAGAAATCAAAACCGAGGAATCTGAACATGAAACAACTGTGCCAACAACACCATCTTCAGAGGACAAAGAATTATGTAACATTTGCAACTCATTATTTGCAATTAAACACGATTTAAAACGTCACATTCGAATACGTCATCCAGAAATCACACCAACGTTTAGCTGTGATGTTTGTTCGAAAGAATTTCCTCGAAAATATCAAATGCAAAAACATCGTAAAGAATTACATTCTGATGTTCCAGAAAAGGAGACGCTCAAACGTGGTCGTACACAACAAAATTCTGATTTATTAGCCCGGTGTAGAATTGAATATGAAGGAAAACCTCATTATCAATGTGAACATTGTCCAAGAGTTATACATTTACCGTATCATTTCCTGCGTCATCAGACTATTCATACGGGAGTACGAGCGTTTTTCTGTCACTTATGTGGGAAAACGTTTCGTTTATCGAGTGGTTTAAGTCGTCACATTAAAGAACTACATCATGGAGTGAAAAAGTACCCGTGTGAAATTTGTGGACGTTGTTTTGCATCGAAAAATACTCGAGATGATCATATGAACATTCACACTGGAGCCAGACCTTTTGTTTGTGATTTATGTGGGAAATGTTTTAAGCAGAAAGCATCGTTACATGTTCACAAAACGTTCCATAAAAATGAGAAACTTCATGTGTGTACGGCTGCCAATTGTGGTAAACAGTTTCGGCGTGCACACGAACTCAAAGTACACGGATGGGTTCACACTGGTTTCAAACCTCATGGATGTACCATGTGTGAGAGTACATTTAGATTAACACGCGATTTAAAACGACATTTACTAAAACGGCATGGAAGTGGTAAAGATGGCCAAACAACGAATGTAACGAAACCAAGTGTTGTGAAGAAACCACCAAAAGATGAAACTTCATCCGGTCAGGTTGGGGTTGTTGTTACAGACGAGGAAAGTGGAACTAGTGAAACGAACCAAATAGCAAATGAATATTTTAATTCGACAAAAAATTATTGTGATCCTGAAGTTAAACCGTCTACTTTTCATCTGCACTAA
- Protein Sequence
- MELKVGLQFASYEELTDFIHLYEEETKQKLWKRSSRTIKSTKNLKKKFNEKIQYYEIQYSCIHGGQRFISKSKGLKKISTLRVDCPFNIKLRASVDGQFLEIRSCNDQHENHSEYMKPEKGERSKEERHSSERIKTRTSKSEKKSKPQNNESMKVDEVISVEMLCRLCGNRSEHLISIYEGEGLEYQLQMKINRHLPFRVERTDTNLPSRCCYQCASTLLTWHDLAEISIEADRRLKTLFGAVKLENFEELEDITEEKFEESKKNENFYNVSTKNKQQDGSETIAFVSFSSFHNAQKSLLSNQNIVPTSTQPETCIKTEDNSDSDDDRGDVTASPLPPSEEENVPRKKLYSCDTCQETFKTLKHFKSHLAETLHKTQSLPKGRPTNEPRYYCEICDYGFPERDLMVEHRAKAHQTSNETVKNENHEQESKSLGVEIKTEESEHETTVPTTPSSEDKELCNICNSLFAIKHDLKRHIRIRHPEITPTFSCDVCSKEFPRKYQMQKHRKELHSDVPEKETLKRGRTQQNSDLLARCRIEYEGKPHYQCEHCPRVIHLPYHFLRHQTIHTGVRAFFCHLCGKTFRLSSGLSRHIKELHHGVKKYPCEICGRCFASKNTRDDHMNIHTGARPFVCDLCGKCFKQKASLHVHKTFHKNEKLHVCTAANCGKQFRRAHELKVHGWVHTGFKPHGCTMCESTFRLTRDLKRHLLKRHGSGKDGQTTNVTKPSVVKKPPKDETSSGQVGVVVTDEESGTSETNQIANEYFNSTKNYCDPEVKPSTFHLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333412; iTF_00333347;
- 90% Identity
- iTF_00333412;
- 80% Identity
- iTF_00333412;