Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997757.1:1721798-1723522[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.5 1e+03 0.3 0.0 26 52 169 195 162 197 0.83

2 13 0.42 2.8e+02 2.1 0.1 23 43 194 214 186 223 0.84

3 13 0.19 1.3e+02 3.2 0.1 21 45 220 244 214 252 0.80

4 13 1.2 8.3e+02 0.6 0.0 21 43 248 270 237 279 0.79

5 13 1.1 7.4e+02 0.8 0.1 21 43 276 298 267 302 0.77

6 13 0.27 1.8e+02 2.7 0.1 21 43 304 326 300 333 0.84

7 13 0.0035 2.3 8.8 0.0 20 44 354 378 346 388 0.85

8 13 5.4 3.6e+03 -1.4 0.0 21 43 383 405 378 410 0.79

9 13 0.62 4.2e+02 1.6 0.0 21 46 411 436 401 443 0.77

10 13 0.44 3e+02 2.0 0.1 21 44 439 462 433 469 0.83

11 13 0.013 9 6.9 0.0 19 43 488 512 479 521 0.85

12 13 0.49 3.3e+02 1.9 0.2 21 43 518 540 512 545 0.82

13 13 0.019 13 6.4 0.1 21 48 546 573 539 574 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.5	1e+03	0.3	0.0	26	52	169	195	162	197	0.83
2	13	0.42	2.8e+02	2.1	0.1	23	43	194	214	186	223	0.84
3	13	0.19	1.3e+02	3.2	0.1	21	45	220	244	214	252	0.80
4	13	1.2	8.3e+02	0.6	0.0	21	43	248	270	237	279	0.79
5	13	1.1	7.4e+02	0.8	0.1	21	43	276	298	267	302	0.77
6	13	0.27	1.8e+02	2.7	0.1	21	43	304	326	300	333	0.84
7	13	0.0035	2.3	8.8	0.0	20	44	354	378	346	388	0.85
8	13	5.4	3.6e+03	-1.4	0.0	21	43	383	405	378	410	0.79
9	13	0.62	4.2e+02	1.6	0.0	21	46	411	436	401	443	0.77
10	13	0.44	3e+02	2.0	0.1	21	44	439	462	433	469	0.83
11	13	0.013	9	6.9	0.0	19	43	488	512	479	521	0.85
12	13	0.49	3.3e+02	1.9	0.2	21	43	518	540	512	545	0.82
13	13	0.019	13	6.4	0.1	21	48	546	573	539	574	0.84

Sequence Information

Coding Sequence: ATGGAAAATAATTCAGATCATGTTATTCCTAAACATTTGTATGTCAATGAGGAAAATATTAAACTTGAAAAACAATTAAATACAGAATTTAATGAAAAAAATGAAGATACAATGGAATTAAAGACAGAAATTAAACAAGAAAATATTACAACGATACAAGAACCAATTAAAATGGAAGTACTAAAAGAAAGTGAAGATATTTATAAAAATATTAAACTTGAACAAGAATTAATTATTAAAGAAGAAATACTTGATGACATTGAGATTGAGAATGAGATTGATAGTAGGAGGATTACAATACAAGATGAACGAATTAAAAGTGAAATACAAGAAGACATCAACAATTATAAAATAGAGGAAATACTAATTAATATAAAACATGAAATTGATGAAAATACTGAAATTGAAGAAAAACAACAAAATCCGACGACATTCATGATTAAAGACGAAACATTTGATGAAAATGTTCCCGTGGCAACGACTACGAAACAGCTGCAATTATTTTCATGTGATGTGTGTAATAAAAAATTTAATTTAAAAGCGAATTTATCAAAACATTTGCGGGTTCATTCTGGTGTAAAACCATATTCATGTGAAATTTGTAATAAATCATTTACACAATCAAATGGTTTAATGGCACATAAACGTACACATACTGGTGAAAAACCATATTCATGTGAAATTTGTCATAAAGCATTCGCTTTTCAAGGTAATTTAAATGAACATAAACGGGTTCATAGCGGTGAAAAACCATTTTCATGTGAATTTTGTCATAAAGCATTTAATACGCAAAAAATTTTAAAACAACATAAACGTACACATACCGGTGAAAAACCATTTTCATGTGAACTTTGTCATAAATCATTTGCACAGCAAAGTAGTTTAATCATGCATACACGGATACATACCGGTGAAAAACCATTTTCATGTGAAATTTGTCATAAAACATTTGTTCATAAACAAAATTTAATTGTACATAAACGAATTCATGATAGAGAGAAACTATTTACGCGGAAAACTATTTCAATTACACAATCGGGTGATTTACGAATTCATAATTCGGATGAAAAACCATTTGTTTGTGGAATTTGTAATAAATCATTTACACAATCAAATGGTTTAAGGGCACATAAACGTACACATACTGGTGAAAAACCATTTTCATGTGAATTTTGTAATAAAGCATTTAATACGCAAAAAATTTTAAAACAACATAAACGTACACATACCGGTGAAAAACCATTTTCATGTGAACTTTGTCATAAATCATTTGCACAGCAAAGTAGTTTAATCATGCATACACGGATACATACTGGTGAAAAACCATTTTCATGTGAAATTTGTAATAAAACATTTGTTCATAAACAAAATTTAATTGTACATACGCGTATTCATGCTAGAGAGAAACTATTTACGCGGAAAACTATTTCAATTACACAATCGGGTGATTTACGAATTCATAATTCGGATGAAAAACCATTTGTTTGTGGGATTTGTCATAAAGCATTTAGTCAATCACATAGTTTAACTATACATAAACGAACACATACCGGTGAAAAACCATATTCATGTGAAATTTGTAATAGAGCATTTAGTCAGAAAAATGGTTTAATTCAACATAAACGTACTCATTCTGGTGAAAAACCATATTCATGTGAAATTTGTAATAAATCATTTACTCAGCTAGCTAATTTATTTAAGCATAAACGAACACAACATACTTGA
Protein Sequence: MENNSDHVIPKHLYVNEENIKLEKQLNTEFNEKNEDTMELKTEIKQENITTIQEPIKMEVLKESEDIYKNIKLEQELIIKEEILDDIEIENEIDSRRITIQDERIKSEIQEDINNYKIEEILINIKHEIDENTEIEEKQQNPTTFMIKDETFDENVPVATTTKQLQLFSCDVCNKKFNLKANLSKHLRVHSGVKPYSCEICNKSFTQSNGLMAHKRTHTGEKPYSCEICHKAFAFQGNLNEHKRVHSGEKPFSCEFCHKAFNTQKILKQHKRTHTGEKPFSCELCHKSFAQQSSLIMHTRIHTGEKPFSCEICHKTFVHKQNLIVHKRIHDREKLFTRKTISITQSGDLRIHNSDEKPFVCGICNKSFTQSNGLRAHKRTHTGEKPFSCEFCNKAFNTQKILKQHKRTHTGEKPFSCELCHKSFAQQSSLIMHTRIHTGEKPFSCEICNKTFVHKQNLIVHTRIHAREKLFTRKTISITQSGDLRIHNSDEKPFVCGICHKAFSQSHSLTIHKRTHTGEKPYSCEICNRAFSQKNGLIQHKRTHSGEKPYSCEICNKSFTQLANLFKHKRTQHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332778;
90% Identity: iTF_00332778;
80% Identity: iTF_00332778;