Ccar016348.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:19837576-19838826[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.041 27 5.3 0.0 22 47 109 134 105 139 0.86 2 9 1.1 7.7e+02 0.7 0.0 21 45 136 160 132 169 0.79 3 9 3.5 2.4e+03 -0.9 0.1 21 32 164 175 158 190 0.77 4 9 0.2 1.3e+02 3.1 0.0 21 47 192 218 185 225 0.84 5 9 2.4 1.6e+03 -0.3 0.1 21 33 220 232 212 245 0.72 6 9 0.16 1.1e+02 3.4 0.0 21 43 248 270 240 275 0.81 7 9 0.031 21 5.7 0.0 21 44 276 299 271 307 0.84 8 9 0.31 2.1e+02 2.5 0.0 23 46 334 357 326 363 0.81 9 9 0.031 21 5.7 0.0 21 44 360 383 356 390 0.89
Sequence Information
- Coding Sequence
- ATGACAAATAATTCATTTGTTGATACAAATAATTATTTATTTATTAATAAAGATAATATTAAAGTTGAAAAAGAATTACATACTGAACTAATTATTAAAAATGAAATATTAGATGAAACTATTTTAATGGAAGGTGGGCACATTAAAATAAAAGAAGAAGGCAGCAATGATAGTGATAGTGTTGTGAGTGTAAAACATGAACCTGTTAGTGATGAAAATGATAAACAAGTGTACACAATTAATTATGAAAATATTAAACTTGAAAAAGAATTACATACTGAACTAATTATTAAAGATGAAATATTAGATGAAACTGATTTAGAAGAAAAACCATTTGTATGTGATATTTGTAATAAAACATTTAATGTGAAAAGTAATTTAGTTAGACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTTGGCAAAATAATTTAGTTGTACATAAACGTATTCACAGCGGAGAAAAGCCATTCTCATGTGATGTTTGTAATAAAACATTTACTGATCTAAGTCATTTAGTTCAACATAAACGTATTCACACCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTCAGAAAGGTGATTTAGTTAAACATAAACGAATTCACAGCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAATCATTTACCGATCAAAGTTATTTAGTTAAACATAAACGAATTCATACCGGAGAGAAACCATTTTCATGTGATATTTGTAATAAAATATTTACTCAGAAAACTTATTTAGTTATACATAAACGTATTCACACCGGAGAAAAACCATTTTCATGTGATATTTGTAATAAAACATTTACTCAGAAAAGTAATTTAGTTATACATAAACATATTCATAGTAGAGAAGAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTTGGGAAAGTGAATCAGTTGTACATAAACGGTTTCATAGTGGAGCAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACCCAAAAAAGTAATTTAGTTTTACATAAACATATTCATAGTGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTCAGAAAAGTAATTTAGTTAAACATAAACGTATTCACAGCGGAGAAAAACTATTTTCATGTGATGTTTGTAATAAAACATTTACTCTTCAACATCATTTAGTTACACATAAACGTATTCACAATCGATAA
- Protein Sequence
- MTNNSFVDTNNYLFINKDNIKVEKELHTELIIKNEILDETILMEGGHIKIKEEGSNDSDSVVSVKHEPVSDENDKQVYTINYENIKLEKELHTELIIKDEILDETDLEEKPFVCDICNKTFNVKSNLVRHKRIHTGEKPFSCDVCNKTFTWQNNLVVHKRIHSGEKPFSCDVCNKTFTDLSHLVQHKRIHTGEKPFSCDVCNKTFTQKGDLVKHKRIHSGEKPFSCDVCNKSFTDQSYLVKHKRIHTGEKPFSCDICNKIFTQKTYLVIHKRIHTGEKPFSCDICNKTFTQKSNLVIHKHIHSREEPFSCDVCNKTFTWESESVVHKRFHSGAKPFSCDVCNKTFTQKSNLVLHKHIHSGEKPFSCDVCNKTFTQKSNLVKHKRIHSGEKLFSCDVCNKTFTLQHHLVTHKRIHNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332720;
- 90% Identity
- iTF_00332871;
- 80% Identity
- iTF_00332871;