Ccar004421.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:25190901-25192109[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.3 4.2e+03 -1.7 0.1 23 32 109 118 107 134 0.72 2 10 0.34 2.3e+02 2.4 0.1 21 43 135 157 129 166 0.80 3 10 2.1 1.4e+03 -0.1 0.0 21 46 163 188 157 194 0.76 4 10 0.26 1.7e+02 2.8 0.0 21 44 191 214 183 218 0.84 5 10 0.072 49 4.5 0.0 21 38 219 237 212 246 0.76 6 10 0.092 62 4.2 0.0 21 45 247 271 240 278 0.83 7 10 0.21 1.4e+02 3.1 0.0 21 43 275 297 270 305 0.84 8 10 8.5 5.7e+03 -2.1 0.0 23 43 305 325 298 334 0.71 9 10 0.059 40 4.8 0.0 21 47 331 357 324 362 0.84 10 10 0.0096 6.5 7.4 0.0 21 44 359 382 354 387 0.89
Sequence Information
- Coding Sequence
- ATGGCAAATAATTCCTTTGTTAATACAAATAATCATTTGTTTATCAATAAAGAAAATATTAAACTTGAAAAGGAGTTACAAACAGAATTAATTATAATTAAAAGTGAAATATTAGATGAAAATGTTGTAATGGAAGGTGAACAAATTACAAATGAAGAAGAAGGCAGCAATGATAGTGTTGTGAGTGTAAAACATGAACCTGTGAGTGATGAAAATGATAAACAATTGTACACAATTAATTATGAAAATATTAAACTTGAACAAGAATTACATACAGAACTAATTATTAAAAATGAAACATTAGATGAAACTGATTTAGGAAACAAACCATTTGCATGTCAAATTTGTAATAAAGGATTTACTCGCCAGCTTCATTTAGTCCACCATAAGCGGATTCATACTGGAGAAAAACCATTTTCATGTGAAATTTGTAATAAAACATTTACACAGAAAAGTTCTTTAGTTATACATGAACGGATCCATAGTGGAGAAAAACCATTTTCATATGAAATTTGTAATAAAACATTTAATCGGCAAAGTAATTTAGTTAAACATAAACGAATTCATAGTGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTCAGAAAGGTGATTTAGTTAAACATAAACGAATTCATAGTGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTATTCGGCAAAGTGATTTAGTTAAACACAAACGTATTCATGGTGGAGAAAAACCATTTTCATGTGATATTTGTAATAAAACATTCACTCAGAAAAGTTCTTTAGTTAAACATAAACGGTTTCATAGTGGAGAAAAACCATTTTCATGTGATATTTGCAATAAAACATTTACTCAGCAAGGTCATTTAAATGCACATAAACGAATTCATAGTGGAGAAAATACATTTCCTTGTGATATTTGTAATAAAACATTTATCCAGAAAAGTGATTTAGTTGTACATAAACGATTTCATAGTGGAGAAAAACCATTTCCATGTGATATTTGTGATAAAAGATTTACTACATCATCGAATTTAATTAAACATAAACATATTCATAGCGGAGAAAAACCATTTTCTTGTGATATTTGTAATAAAACATTTAATCAGAAAAGTAATTTAATTAAACATAAACGTATTCACAATCGGTTAAACGCAGAAACAAATTTGTTACAAAATAAAATCATCGTTATTTAA
- Protein Sequence
- MANNSFVNTNNHLFINKENIKLEKELQTELIIIKSEILDENVVMEGEQITNEEEGSNDSVVSVKHEPVSDENDKQLYTINYENIKLEQELHTELIIKNETLDETDLGNKPFACQICNKGFTRQLHLVHHKRIHTGEKPFSCEICNKTFTQKSSLVIHERIHSGEKPFSYEICNKTFNRQSNLVKHKRIHSGEKPFSCDVCNKTFTQKGDLVKHKRIHSGEKPFSCDVCNKTFIRQSDLVKHKRIHGGEKPFSCDICNKTFTQKSSLVKHKRFHSGEKPFSCDICNKTFTQQGHLNAHKRIHSGENTFPCDICNKTFIQKSDLVVHKRFHSGEKPFPCDICDKRFTTSSNLIKHKHIHSGEKPFSCDICNKTFNQKSNLIKHKRIHNRLNAETNLLQNKIIVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332837;
- 90% Identity
- iTF_00332837;
- 80% Identity
- iTF_00332837;