Ccar020280.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:111662452-111663843[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.7 4.7e+02 1.4 0.1 21 46 146 171 140 177 0.78 2 9 1.2 8.1e+02 0.6 0.0 21 43 174 196 167 202 0.86 3 9 0.05 34 5.1 0.1 21 43 202 224 194 229 0.87 4 9 0.0012 0.81 10.2 0.1 21 52 230 261 225 263 0.85 5 9 0.1 70 4.0 0.0 21 44 286 309 277 315 0.87 6 9 3.1 2.1e+03 -0.7 0.1 22 44 315 333 312 347 0.68 7 9 6.2 4.2e+03 -1.7 0.0 23 43 344 364 337 369 0.81 8 9 0.06 40 4.8 0.1 21 43 370 392 357 397 0.88 9 9 0.0012 0.79 10.3 0.1 21 52 398 429 393 431 0.85
Sequence Information
- Coding Sequence
- ATGGCGAGTAATTCATTTCATTTCGTAAGTACTGGTTTATTTTTAAGTGAAGAGCAAATTAAAAAAAACAAATTAAATGAATTAAATACAGAGTTTATTATTAAAAAGGAAATGTTTGATGAAAGTAATGCATATGAATCAATTGAAGAACAATCTGCAATGGAACCCAAACAAATTAAAGAAGAAATATTGGACGAAACTAATGGTACAATAGAGCACGGAGGAATTCTTCTAAATGATCCGTTATTCAGGGACAAATATGAAAGTATTAAACTTGAAGAACAATTAAATACTGAATTAATTATTAAGGAGGAAATATTTGATGAAAATATTTTAGAATATCATAGGACTAAGAATGAAGAAAAATCTTTATCATGTGAAATTAATGATACAACATTTAATCGTGAGGAAAATTTAAATAAACGACCTCATATTGGTGAAAAACCTTTTTCATGTGAAATTTGTGATAAAACGTTTAGTCGAAAACATCATTTAACACAACACAAACAAATTCATATGGGAGAAAAACCTTTTTCGTGTGAAATGTGTGATAAAACATTTATTCAGAAACAACATTTAAACCAACACAAACGAACTCATACTGGAGAAAAACCATTTTCATGTGAAATTTGTAATCAAACATTTAATCATAAACAAAATTTAAATCAACACAAACGCACGCATACTGGAGAAAAACCTTTTTCATGTGAAATTTGTAATAAAGCATTTAATCAGAAACAAAATTTAAACAAACACAAACGCATTCATACTGGGGTGAAACCTTTTTCATGCGAGTTGTGTAATAAAACATTTATTCAAAAACATCATTTAAATCAGCACAAGCAAACTCATACTGGAGAAAAACCTTTTTCATGTGAAGTGTGTGATAAAACATTTACGCAGAAAAGCAATTTAGTTACGCATAAACAAATTCATATTGAAGAAGGGCCTTTTTCATGCGAAATTTGCGATAAAAAGTTTAATCTAAAACATCATTTAAATCAACACAAACGAATTCATATCGAAGAAAAACGTTTCTCATGTGAAGTATGTGATAAAATATTTATTCAGGAAGAACAATTAAATCAACACAAACGAACTCATACTGGAGAAAAACCATTTTCATGTGAAATTTGTAATCAATCATTTAAGTTTAAACAAAATTTAAATCAACACAAACGAACTCATACGGACGAAAAACCTTTTTCGTGTGAAATTTGTAATAAAACATTTAATCAGAAACAGAATTTAAACAAACACAAACGAATCCATACTGGGGTGAAACCTTTTTCATGCGAGTTGTGTAATAAAACATTTATTCAGAAACATCATTTAATTCAACACAAACAAACTCATACTAGAGTCAAAACCTTGTTCTTAAGAAGTGTGTGA
- Protein Sequence
- MASNSFHFVSTGLFLSEEQIKKNKLNELNTEFIIKKEMFDESNAYESIEEQSAMEPKQIKEEILDETNGTIEHGGILLNDPLFRDKYESIKLEEQLNTELIIKEEIFDENILEYHRTKNEEKSLSCEINDTTFNREENLNKRPHIGEKPFSCEICDKTFSRKHHLTQHKQIHMGEKPFSCEMCDKTFIQKQHLNQHKRTHTGEKPFSCEICNQTFNHKQNLNQHKRTHTGEKPFSCEICNKAFNQKQNLNKHKRIHTGVKPFSCELCNKTFIQKHHLNQHKQTHTGEKPFSCEVCDKTFTQKSNLVTHKQIHIEEGPFSCEICDKKFNLKHHLNQHKRIHIEEKRFSCEVCDKIFIQEEQLNQHKRTHTGEKPFSCEICNQSFKFKQNLNQHKRTHTDEKPFSCEICNKTFNQKQNLNKHKRIHTGVKPFSCELCNKTFIQKHHLIQHKQTHTRVKTLFLRSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332876;
- 90% Identity
- iTF_00332876;
- 80% Identity
- iTF_00332876;