Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997754.1:10482122-10483882[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.8 4.6e+03 -1.8 0.0 23 43 83 103 80 113 0.78

2 14 1.2 7.8e+02 0.7 0.1 26 47 114 135 110 140 0.83

3 14 0.18 1.2e+02 3.3 0.0 21 44 137 160 133 170 0.84

4 14 0.01 7 7.3 0.2 21 52 193 224 186 230 0.86

5 14 0.0043 2.9 8.5 0.1 21 52 249 280 243 282 0.86

6 14 0.46 3.1e+02 2.0 0.0 21 45 277 301 274 310 0.78

7 14 0.94 6.3e+02 1.0 0.0 21 44 305 328 301 336 0.85

8 14 0.36 2.4e+02 2.3 0.1 27 52 385 410 383 412 0.91

9 14 0.6 4e+02 1.6 0.0 22 43 408 429 405 438 0.79

10 14 0.042 29 5.3 0.1 21 43 435 457 430 462 0.90

11 14 0.22 1.5e+02 3.0 0.0 21 45 463 487 458 494 0.79

12 14 1.7 1.2e+03 0.1 0.1 21 30 491 500 485 514 0.86

13 14 0.28 1.9e+02 2.7 0.0 21 45 519 543 510 546 0.87

14 14 0.043 29 5.3 0.0 21 44 547 570 543 577 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.8	4.6e+03	-1.8	0.0	23	43	83	103	80	113	0.78
2	14	1.2	7.8e+02	0.7	0.1	26	47	114	135	110	140	0.83
3	14	0.18	1.2e+02	3.3	0.0	21	44	137	160	133	170	0.84
4	14	0.01	7	7.3	0.2	21	52	193	224	186	230	0.86
5	14	0.0043	2.9	8.5	0.1	21	52	249	280	243	282	0.86
6	14	0.46	3.1e+02	2.0	0.0	21	45	277	301	274	310	0.78
7	14	0.94	6.3e+02	1.0	0.0	21	44	305	328	301	336	0.85
8	14	0.36	2.4e+02	2.3	0.1	27	52	385	410	383	412	0.91
9	14	0.6	4e+02	1.6	0.0	22	43	408	429	405	438	0.79
10	14	0.042	29	5.3	0.1	21	43	435	457	430	462	0.90
11	14	0.22	1.5e+02	3.0	0.0	21	45	463	487	458	494	0.79
12	14	1.7	1.2e+03	0.1	0.1	21	30	491	500	485	514	0.86
13	14	0.28	1.9e+02	2.7	0.0	21	45	519	543	510	546	0.87
14	14	0.043	29	5.3	0.0	21	44	547	570	543	577	0.89

Sequence Information

Coding Sequence: ATGGACTTCTTAAAAATTGAAGCCAAAATATCTGAAGGAACTAGTAATGAAATAGAACATATATCAATTAAAGAAGAAATATTAGAAGAACCTGCTGAAATTAAGCAGGAAGAAATGCATTTCAATGACTCGATCACAGAATATGAAAATATTAAACTTGAACAACATTTAAATACAGAACATATAATTAAAAACGAAATTATTAATGAAAATGTTTTAGAACATCTACTTACTGATACCGAAGAAAAACATTTTTCATGTAAAATTTGTGATGAAACGTTTACTCTAAAACAAAATTTAATTAAGCATGAATTCATTCACACAGGGAAAAAAATGTATTCATGTGAAATTTGTGATAAAACTTTAAGTGATAGAAGTAATTTAATTAGACATAAGCGAATTCATACTGGAGAAAAACCATTTACATGTGAAGTTTGTGAAAAGAAATTCACTCAGAAGAGCGATTTGATTAAACATAAACGAACACATACTGGAGAAAAACCATTTAATTGTGAAGTTTGTAGTAAAAAATTTACTTGGAAAACAGATTTAATAACACATAAGCGAACGCATACTGGAGAAAAACCTTTTAAATGTGAAGTTTGTGATCAAAAATTTTCCCAGACACAATATTTAAACAGACATCTAAGAACACACACTGGGGAAAAACCATTTGTATGTGAAGTTTGTGATAAAAAATTTGCTTGCAAAACAGATTTAATTATACATAAACGAACGCATACTGGAGAAAAACCATTTACATGTAAAGTTTGTCACAAAAAATTTTCCCAGATACAACATTTAAATACACATCTAAGAATACATACTGGAGAAAAACCATTTACATGTGAAGTTTGTGATAAAAAATTTACTGATCATAGCAATTTAGTTGTGCATGAACGAATTCATAAAGGAGAAAAACCTTATTCATGTGAATTTTGTGATAAAAAATTTAGTCAAAAAATTAATTTAACTGAACATAAACGAAGTCATTTTCGAGAACAACATTTGAATTTAAAGTCTGAAACTGTTACATTGGAACATGGAAGAATTAAAGAAGAAATATCAGAGGATATTGTTAAAATTGAACATGTTTTAATTAAAGAAGAAATATCGGAAATAAATAAATTAACTCACGACGGTTTATTTCCTTGTGATATTTGTAATAAGACATTTAATCAGCATTATAGTTTAACTAGACATAAAAAAATTCACACTATAGAAAAACCATTTACATGTGAAGTTTGTGACAAAAAATTTTCCCAGTTACAACATTTGGATACACATAAGCGATTTCATACTGGAGAAAAACCATTTACATGTGAAGTTTGTAATAAAAAATTTATTCAGAAATGTGATTTAAATAGACATAAACGAACGCATACTGGAGAAAAACCATTTACATGTGAAGTTTGTGGTAAGAAATTTACTCAAACAAGCAGTTTAATTAATCATAAACGAATGCACACTGGAGAAAAACCCTTTACATGTGAAGTTTGTGATAAGAAATTTTCTCACAAATGCTATTTAACTACACATAAGCGAACACATACTGGAGAGAAACCATTTATATGTGAAGTTTGTGACAAAACATTTTTCCAGAAACAACATTTAAACTCACATCTAAAAACACATACTGGAGAAAAACCATTTACATGTGAAGTTTGTGATAAGAAATTTACTCATAAAAATAATTTAATTCGACATAAACGCATTCATACTGAAGAAAAAACTGTCTCATCTGAAGTGATCAAATTTTAA
Protein Sequence: MDFLKIEAKISEGTSNEIEHISIKEEILEEPAEIKQEEMHFNDSITEYENIKLEQHLNTEHIIKNEIINENVLEHLLTDTEEKHFSCKICDETFTLKQNLIKHEFIHTGKKMYSCEICDKTLSDRSNLIRHKRIHTGEKPFTCEVCEKKFTQKSDLIKHKRTHTGEKPFNCEVCSKKFTWKTDLITHKRTHTGEKPFKCEVCDQKFSQTQYLNRHLRTHTGEKPFVCEVCDKKFACKTDLIIHKRTHTGEKPFTCKVCHKKFSQIQHLNTHLRIHTGEKPFTCEVCDKKFTDHSNLVVHERIHKGEKPYSCEFCDKKFSQKINLTEHKRSHFREQHLNLKSETVTLEHGRIKEEISEDIVKIEHVLIKEEISEINKLTHDGLFPCDICNKTFNQHYSLTRHKKIHTIEKPFTCEVCDKKFSQLQHLDTHKRFHTGEKPFTCEVCNKKFIQKCDLNRHKRTHTGEKPFTCEVCGKKFTQTSSLINHKRMHTGEKPFTCEVCDKKFSHKCYLTTHKRTHTGEKPFICEVCDKTFFQKQHLNSHLKTHTGEKPFTCEVCDKKFTHKNNLIRHKRIHTEEKTVSSEVIKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332723;
90% Identity: iTF_00332723;
80% Identity: iTF_00332723;