Ccar017238.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- Znf131
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:9924823-9926091[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.9 4e+03 -1.6 0.1 21 48 227 254 218 255 0.75 2 5 0.014 9.4 6.8 0.0 18 52 253 287 247 287 0.86 3 5 0.0017 1.2 9.7 0.8 22 43 285 306 280 310 0.91 4 5 0.003 2 9.0 0.0 21 46 312 337 308 343 0.87 5 5 0.055 37 4.9 0.0 21 45 340 364 336 370 0.88
Sequence Information
- Coding Sequence
- ATGTTCAATTTTGAAAATATTTGCCGTACCTGTTCCTTACAGGGTGAATTACAATCCTTATTTGCTGATGATATTCCAAGTCCTGCAGAAATGTTAACTGAAATTGATATTAAGGTGATAAAGGGCGATAAATATCCACAAAATATTTGTAAAAGATGTTTACTTAATTTAAAATCAGCGTACTTATTTAAGAGTCAATGTCAAAATGTCTATAATAAATTCAAACAATATGTATCGTCGAACTCAGAAACTGTCATAGATAATGGAGAAATGATTAATACGGTTTTTATTAAGGAAGAAAAACAATCGGATCATTTAGAAATTGACCAAAATTGTTTAGAATTAGAGCGGGAATTAATAAATAATTCAAATAATAAAAATGACTACGAATGCGAAAAATGTAGCAAAAAATTTAAAAATCAAAAAAGTTATCAGCGCCATTTGGATAAGGGCAAAACATTTAAACAGTGTAAAAATACTTATAAACGTAAGCTTAAAATCGAATGTGATGTAACGTTAGAACATGACGATAATGAAATTGATATCTCAAATAAAACAACTGGAAAAACTTTCGTTAGAGATAAAATTTCCCAAAAAATCGAAAAATTATTATGTGATTTTTGTGGTCTAGAATATAGGAATTTTACTAGACTAAAGGAACATGTTCGAACTCATACCGGTGAAAAACCATTTGCTTGTATCGAATGCAATAAATCCTTTCGATGTAAATCACTTTTAAACCATCATCAACGAATCAATCATTCAAGTGAAAAACCATATAAATGTGATTTTTGTGGGAAATGTTTTGGATATTCAAAATGGTTAAAAAACCATTTAAGGATACATACAAATGATAAACCGTATACATGTGATATTTGTAATCAAAAATTTCGACAAAGGCATCATTTAACACGACATAAATACGTACATACCGGTGAAAAACCATTTTCGTGCGGTGTTTGTGATAAACAATTTACACAAAATAGTAATTTACGAACGCATATGCGAACACATACAGGTGAAAAACCTTATGTGTGTTCGATATGTGAGAAAGGCTTTCATGATTCAAGTAGTTTGAAAAATCATCGAGAAAAGCATAAAATGTTTAATAATGAAGAAAATCAAAATGTACCACCTATTTTAAATACAGATAAATGA
- Protein Sequence
- MFNFENICRTCSLQGELQSLFADDIPSPAEMLTEIDIKVIKGDKYPQNICKRCLLNLKSAYLFKSQCQNVYNKFKQYVSSNSETVIDNGEMINTVFIKEEKQSDHLEIDQNCLELERELINNSNNKNDYECEKCSKKFKNQKSYQRHLDKGKTFKQCKNTYKRKLKIECDVTLEHDDNEIDISNKTTGKTFVRDKISQKIEKLLCDFCGLEYRNFTRLKEHVRTHTGEKPFACIECNKSFRCKSLLNHHQRINHSSEKPYKCDFCGKCFGYSKWLKNHLRIHTNDKPYTCDICNQKFRQRHHLTRHKYVHTGEKPFSCGVCDKQFTQNSNLRTHMRTHTGEKPYVCSICEKGFHDSSSLKNHREKHKMFNNEENQNVPPILNTDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333420;
- 90% Identity
- iTF_00333420;
- 80% Identity
- iTF_00333420;