Ccar015252.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:74501219-74502367[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.035 24 5.5 0.0 21 43 100 122 95 126 0.86 2 7 0.011 7.7 7.1 0.0 20 43 127 150 121 160 0.84 3 7 0.11 73 4.0 0.0 21 45 184 208 177 215 0.80 4 7 0.34 2.3e+02 2.4 0.0 21 42 212 233 205 238 0.75 5 7 0.029 19 5.8 0.1 21 45 240 264 234 271 0.86 6 7 0.085 57 4.3 0.1 21 50 268 297 263 300 0.85 7 7 1.4 9.6e+02 0.4 0.0 26 45 301 320 296 324 0.86
Sequence Information
- Coding Sequence
- ATGGAACTTGAAAAACAATTAAATACAGATAAACATGTATTAATCAAGGAAGAAATGTTAACAGAAACTGTTGAAATTAAACAGGAAGAAATTCATTTCAATGATTCGATCACAGAAAATGGAAATCTTGAATTTGAAGAACAAGTCAATACAGATCTAATAATTAAAAAGGAAATTTTAACTAAAAATAAAAGAATCAACGCTGAAGAAAAATCTTTGAAATATTTTCTGTGTGAAACTTGTGAAAAAACATTTACTAGAAAACATAATTTAATTATTCATATACGAACTCATACTGGGGAAAAACCATTTACATGTGAAATTTGTGATAAGAATTTTACACAGAAAAATGATTTAATTAAACATAAACGAACGCATACTGGAGAAAAACCATTTACATGTGATGTTTGTCATAAAAAATTTGTTGATCATAGAAATTTAATTGTTCATCAACGAAATCATACCGGAGAAAAACCGTTTTCATGTGAAGCTTGTGAAAAAACATTTAGTAATAAAAGTAGTTTAATGAAACATAAACTATTTCATAGCGGAGAAAAACCATTTACATGTGAAGTTTGTGATAAAAAATTTATTCAAAAAAGCGATTTAATTAAACATAAACGAATACATACTGGAGAAAAACCATTAACATGTGAAGTTTGCGATAAAAAATTTGTTGATCATAGTAATTTAGCTGTGCATAAACGAATTCATACTGGAGAAAAGCCTTTTCTGTGTGAAATTTGTAAAAAAACCTTTACTAGGAAACGAAATTTAATTATTCATATACGAACTCATACCGGAGAAAAACCATTAGCATGTGAAGTTTGTGATAAAAAATTTAATTCACAAAGTAATTTAATTCGACATAAACGAATTCACACCGGAGCAAAATCTTATTCTTGTAAAATTTGTAATAAAATATTTAATCAAAAACATCAGTTTAATGAACATAAAGAATATCATTCTCGAGAAAATCATTTGAACATGAAGTCTGAAACTGTTCGATTGGAACATGAAGAAGTTAAAAAAGATATACCAGAAGAAATGGTTAAAATTGAACAAGTATTTATTAAAGAAGAAATATTGGACGAAAGTTTTGAAACAAAACATGTAGCAATTAATAATGAAGAAACGTTTTTCTTGTGA
- Protein Sequence
- MELEKQLNTDKHVLIKEEMLTETVEIKQEEIHFNDSITENGNLEFEEQVNTDLIIKKEILTKNKRINAEEKSLKYFLCETCEKTFTRKHNLIIHIRTHTGEKPFTCEICDKNFTQKNDLIKHKRTHTGEKPFTCDVCHKKFVDHRNLIVHQRNHTGEKPFSCEACEKTFSNKSSLMKHKLFHSGEKPFTCEVCDKKFIQKSDLIKHKRIHTGEKPLTCEVCDKKFVDHSNLAVHKRIHTGEKPFLCEICKKTFTRKRNLIIHIRTHTGEKPLACEVCDKKFNSQSNLIRHKRIHTGAKSYSCKICNKIFNQKHQFNEHKEYHSRENHLNMKSETVRLEHEEVKKDIPEEMVKIEQVFIKEEILDESFETKHVAINNEETFFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332940;
- 90% Identity
- iTF_00332940;
- 80% Identity
- iTF_00332940;