Ccar010247.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:91210264-91211538[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.5 1.7e+03 -0.4 0.1 15 48 94 126 88 128 0.75 2 8 0.00012 0.08 13.5 0.0 20 51 155 186 148 189 0.83 3 8 3.7 2.5e+03 -0.9 0.0 21 44 184 203 180 209 0.69 4 8 2.2 1.5e+03 -0.2 0.0 22 44 245 267 227 276 0.82 5 8 0.0073 4.9 7.7 0.0 19 43 298 322 288 329 0.84 6 8 1.9 1.3e+03 -0.0 0.2 22 33 331 342 327 356 0.77 7 8 0.062 42 4.7 0.0 21 43 358 380 350 386 0.82 8 8 0.0014 0.93 10.1 0.1 21 45 386 410 383 419 0.84
Sequence Information
- Coding Sequence
- ATGGAACATATATTTATTAAAGAAGAAATACTAGATGAAAACGTTTTATCAGAACATGAACCAATTCATATAAAGAATGAAAAAATTAAACATGAAAATAAATTTATTATAAAATCAATAATTAAAGAAGAAATTTTAGACGAAAATGCACTGAATCAAGAACTAATTCAAAATCGAATAAATGATGAAAATATTAAACATAAAAATATTGAAAATATTAAACTTGAAAAGGAATTAAATACAGAATTCATAATTAAGGATGAAACACCAGAAGAATTTCCACGAATTTCAACTGAAAATGAACGTTTTTCATGTGAAGTTTGTAAGAAAACATTTAAAGATCAAAATCATTTAAAGACTCATTTTCGAAATCAACATACAAAAGTGAATAGTTTTCCATGTGATGTTTGTGATAAAACATTTGCACACCAAAGTATGTTAATTCCACATAAACGAACTCATAATGGAGAAAAACCATTTTCATGTGATATCTGTTATAAATCGTTTACACAACAAGGTAATTTAGTGAATCATATACGTATTCATACCGGTGAAAAACCATTTTCATGTGATCTTTGTGTTAAATCATTTAATGTGAAAAGTCATTTAACTAAACATAAACTAATACACGTGCGAGAAAAAGAGGGTGAAAAACGTTTTTCATGTGATATTTGTAAGGAAAAATTTGATGAACGAAGTGATTTAACTCAACATAAAAGAACTCATAATGTGGAAAAATTATTTTCGTGTGATATTTGTTTAAAAAAGTTTTCTCAACAAAATAGTTTATATAAACATAAATTTATTCATGCAGAAGAAAAACCATTTCAATGTGATAATTGTGATAAAACATTTACACGGAAAAGTGGTTTAATCGAACATAAAAGAAAACATAGTGGTGAAAAACCATTTTCATGTGCTTTCTGTGATAAATCATTTACACAACAAAGTAATTTAAATAGACATAAACTTATACATAATGGTGTAAAAGAAAAACCATTTTCGTGTGATATCTGTTGTAAAACATTTAGTTACGATAGTAGTCTTAGTCAACATAAACGTACGCACACCGGTGAAAAACCATTTTCATGTGATATTTGTGAAAAAACATTTAATCAACAAAGTATTTTACTTCGACATAAACTTATACATACTGGAGAAAAACCATTTTCTTGTGGTATTTGTTATAGAACTTTCGCTCAACAAGGCAATTTAATCAATCACAAACGTACTCATTCTCGTGATAAACCACAAATTATACAGGGTGTCCCGTAA
- Protein Sequence
- MEHIFIKEEILDENVLSEHEPIHIKNEKIKHENKFIIKSIIKEEILDENALNQELIQNRINDENIKHKNIENIKLEKELNTEFIIKDETPEEFPRISTENERFSCEVCKKTFKDQNHLKTHFRNQHTKVNSFPCDVCDKTFAHQSMLIPHKRTHNGEKPFSCDICYKSFTQQGNLVNHIRIHTGEKPFSCDLCVKSFNVKSHLTKHKLIHVREKEGEKRFSCDICKEKFDERSDLTQHKRTHNVEKLFSCDICLKKFSQQNSLYKHKFIHAEEKPFQCDNCDKTFTRKSGLIEHKRKHSGEKPFSCAFCDKSFTQQSNLNRHKLIHNGVKEKPFSCDICCKTFSYDSSLSQHKRTHTGEKPFSCDICEKTFNQQSILLRHKLIHTGEKPFSCGICYRTFAQQGNLINHKRTHSRDKPQIIQGVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332919;
- 90% Identity
- iTF_00332919;
- 80% Identity
- iTF_00332919;