Ccar003301.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997759.1:27404941-27406675[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.61 4.1e+02 1.6 0.1 17 44 110 133 96 142 0.73 2 8 1 6.9e+02 0.9 0.0 21 45 142 166 136 169 0.87 3 8 0.022 15 6.2 0.1 22 47 204 229 197 236 0.82 4 8 2.8 1.9e+03 -0.5 0.1 22 31 232 241 226 254 0.73 5 8 0.0023 1.6 9.3 0.2 18 43 257 281 248 286 0.84 6 8 0.00086 0.58 10.7 0.1 8 52 285 334 282 336 0.73 7 8 0.38 2.5e+02 2.3 0.1 21 46 359 384 353 389 0.86 8 8 0.026 18 6.0 0.0 21 43 437 459 429 467 0.88
Sequence Information
- Coding Sequence
- ATGTCTGATGTTACGATTGTGGATATAAAATCAACACAGATTAAACAAGAAAGTTTAAATGTAAATAATCTGTTAATTAAAGAAGAAAAAATTGATATGGAATCTTCAACAATTAAAGAAGAGTGCATTGACGTGGATTATCCAACGATTAAAGAAGAAAACTTCAGTGAAATGTTAGAACTTTATTCATGTGATTTCTGTGACGAAATATTTACAACTGAAGACGATTTGTTTACACATAGACGTATTCATACCGGAGTAAAACCATTTGTCTGTGAAGTTTGTGATAAAACTTTTGATCGTCCAAGTTCCTTAGAACGCCATCAACGTATTCATACTGGAGAAAAACCTTTTGTATGTGATATTTGTGATAAAAGTTTCAGCCTTCGGCATCATTTAGTTGATCATCAACGAACCCATACCGGTGAAAAACCTTTTGCATGTGATTCTTGTGATAAAACATTTTCGAACTCAAGCAGCTTGATTCGACATAAAAAGATTCACACTGGGGAAAATTCATCAAATAAAAATCGTTTTTCATGTAATTTGTGTGATAAAACATTTAATCATCGTAACAGTTTTGTTTATCATAGACGCTTTCATGCGGGTGAAAAATTATTTACATGTGAAGTGTGTAAAAAAGTTTTTGATCGGCCAAGTAATTTAGAACGGCATGAACGCATTCATTCTGGAAAGAAACCCTTCACCTGTGATGTTTGTAATAAATCGTTTAGTTTACAACACCATTTAACCGATCATAAACGAACTCATAGTGGAGAAAAGCCATTTTCTTGTGAGCTTTGTTATAAAACCTTTTCGAGCTCAAGTAGTTTACATCGACATAAACGAGCTCATCAGGAGGGTGAAGAAAAACCATTTGGAGAAATTAAGGTTCGAACTAAACAAGTTGAAAAATCATTTACGTGTGAGATTTGTGATAAAAGTTTCGATCGACCAAGTAATTTAGAACGTCATGCGAGAATTCATACCGGAGTAAAACCATATTCATGTGAAGTTTGTGAAAAAACATTTTCCCTTCGACATCATTTAATAGTACACACCCGAACTCATACTGGTGAAAAACCGTATTCTTGTAATTTTTGTAGCCAAGATTTCTCAAGTTCAAGTAGTTTAAACCGACATCAACAGATTCATAATGCGGAAAAATTATCTACAAATGATATTTCTGATTTATCCGAATTCGGCAATTTTAATGAAAATTCGGGAGAAAAACTGTTTTCATGTGATGAATGTGGAAAATCTTTCACTCAGCTAAATTATTTGGATAAACACAAAAAAATTCACTACGAAGAAAAACCATTTTCATGTGATGTTTGTGAGAGAAGCTTTAAGGATTCAAACAATTTAGATAAACATAAGCTCGTTCATAGTGGGGAAAAATCATTTTCGTGTGATTTATGCGATAAAGCTTATTTCAATTCAAGTGCCTTAGCTTTACATAAACGAACCCACACGGGTGAAAAACCATTCGCTTGTGATGTTTGTGGAAAATCGTTTAGTTTATATCACTATTTAAGTTTGCACTTTCGAGTTCATACAAGGAAAAAATCTTTGTGA
- Protein Sequence
- MSDVTIVDIKSTQIKQESLNVNNLLIKEEKIDMESSTIKEECIDVDYPTIKEENFSEMLELYSCDFCDEIFTTEDDLFTHRRIHTGVKPFVCEVCDKTFDRPSSLERHQRIHTGEKPFVCDICDKSFSLRHHLVDHQRTHTGEKPFACDSCDKTFSNSSSLIRHKKIHTGENSSNKNRFSCNLCDKTFNHRNSFVYHRRFHAGEKLFTCEVCKKVFDRPSNLERHERIHSGKKPFTCDVCNKSFSLQHHLTDHKRTHSGEKPFSCELCYKTFSSSSSLHRHKRAHQEGEEKPFGEIKVRTKQVEKSFTCEICDKSFDRPSNLERHARIHTGVKPYSCEVCEKTFSLRHHLIVHTRTHTGEKPYSCNFCSQDFSSSSSLNRHQQIHNAEKLSTNDISDLSEFGNFNENSGEKLFSCDECGKSFTQLNYLDKHKKIHYEEKPFSCDVCERSFKDSNNLDKHKLVHSGEKSFSCDLCDKAYFNSSALALHKRTHTGEKPFACDVCGKSFSLYHYLSLHFRVHTRKKSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332714;
- 90% Identity
- iTF_00332714;
- 80% Identity
- iTF_00332714;