Ccar022206.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:118296895-118298294[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.022 15 6.2 0.0 21 44 144 167 137 175 0.81 2 10 0.22 1.5e+02 3.0 0.0 22 42 173 193 165 198 0.81 3 10 0.26 1.7e+02 2.8 0.0 21 43 200 222 195 225 0.85 4 10 0.073 49 4.5 0.1 21 40 228 247 223 254 0.75 5 10 0.036 24 5.5 0.1 21 35 256 270 238 282 0.76 6 10 0.054 36 5.0 0.0 21 44 284 307 279 316 0.86 7 10 1.7 1.2e+03 0.1 0.1 21 33 312 324 307 343 0.70 8 10 0.068 46 4.6 0.0 21 48 340 366 333 372 0.83 9 10 0.74 5e+02 1.3 0.0 21 48 368 395 366 401 0.84 10 10 2.5 1.7e+03 -0.4 0.0 21 32 396 407 387 420 0.78
Sequence Information
- Coding Sequence
- ATGGAAGAAATACCAAACATCAACAGCAATGGTATTAATGTGAAAAGTGAACAAATTAGTGAAAATGACGAACATTTATCTACAATTAACAACGAAAGTATTAAACTTGAAAAACAATCAACTATAGAATATATTAAAGTTGAAATGTTACAAGGGATTGACAGTGATACAGTGCAAGATGGACGAATTAAAAATGAATTTCCAGAAGACATCAATTATGATACAATGGGACAAATAGTTAAATATGAAGAAGTTCATGACAATGGCGAACCAAACACAGAAGTGATTTTTAAAAATGAAATATTAGTCGATGAAAGTGTTTTAGAATCACAGCGGATAAATACTAGAAAAAAATTATATTCATGTGATACTTGCGGTAAAAAATTTAATCAGAAAAATCATTTAGTAAATCATGAGCGGATCCACAGTGGTGAAAAACCATTTACTTGTGATATTTGTAATAAAGCTTTTACTCAAGAAATTAGTTTGATTAAGCATAAATTGATTCACAACGGAGATAAACCATTCACGTGTGATATTTGTAATAAAGCATTTACTCAGAAAATTAGCTTGGATACACATAAATGGACTCACAGCGAAGAAAAACCATTCTCGTGCGATATTTGTAATAAAACTTTTACTCAGAAAGTAAGCTTGGTTAAACATCAATGGACTCACAGTGGAGAAAAACCAGTTACATGTGATATTTGTAATAAAACATTTACTACTCAACACAGTTTAGGTCAACATAAACGAATTCACAGTGGAGAAAAACCATTTTCATGTAATATTTGTTATAAATCATTTAATAGAGCAAATATTTTAGTTGGGCATAAACGAATTCATACTGGGGAGAAACCATTTTCATGTGATGTTTGTAACAAAACATTTACTGATAAAAGTAATTTAGTTCGACATAAACGACATCACAGTGGAGAAAAACCATTTTTATGTGATATTTGTAATAAATCATTTAATAGTCAAGCACATTTAACTATCCATAAACGAATTCATAGCGGGGAGAAACCATTTTCATGTGATATTTGTAATAAAACATTTACCGATAAAGGTAATTTAGGTAAACATGAACTTATTCATACCGGGGAGAAACCATTTGAATGTGATTTTTGTGATAAATCATTTAATAGATCAAACGTTTTAGTTAGGCATAAACGAATTCATAGCGGGGAGAAACCATTTTTGTGTGATATTTGTAATAAAACATTTGCTGATAAAAGTAGTTTAGTTACACATAAACGAAATCATAATGGAGAGAAACCAATCAAAAACAATTTGGAATGTGGATTTTCGGGCTAA
- Protein Sequence
- MEEIPNINSNGINVKSEQISENDEHLSTINNESIKLEKQSTIEYIKVEMLQGIDSDTVQDGRIKNEFPEDINYDTMGQIVKYEEVHDNGEPNTEVIFKNEILVDESVLESQRINTRKKLYSCDTCGKKFNQKNHLVNHERIHSGEKPFTCDICNKAFTQEISLIKHKLIHNGDKPFTCDICNKAFTQKISLDTHKWTHSEEKPFSCDICNKTFTQKVSLVKHQWTHSGEKPVTCDICNKTFTTQHSLGQHKRIHSGEKPFSCNICYKSFNRANILVGHKRIHTGEKPFSCDVCNKTFTDKSNLVRHKRHHSGEKPFLCDICNKSFNSQAHLTIHKRIHSGEKPFSCDICNKTFTDKGNLGKHELIHTGEKPFECDFCDKSFNRSNVLVRHKRIHSGEKPFLCDICNKTFADKSSLVTHKRNHNGEKPIKNNLECGFSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332899;
- 90% Identity
- iTF_00332899;
- 80% Identity
- iTF_00332899;