Ccar015113.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:66553812-66555020[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.03 21 5.7 0.0 22 44 67 89 63 93 0.90 2 11 0.019 13 6.4 0.0 21 47 94 120 89 127 0.84 3 11 0.059 40 4.8 0.2 21 46 150 175 143 181 0.81 4 11 0.11 75 3.9 0.0 21 47 178 204 173 210 0.84 5 11 1 6.9e+02 0.9 0.0 21 45 206 230 200 237 0.77 6 11 0.15 99 3.6 0.0 21 46 234 259 227 265 0.82 7 11 0.015 10 6.8 0.0 21 47 262 288 255 294 0.83 8 11 1.6 1.1e+03 0.2 0.1 21 46 290 315 285 321 0.78 9 11 0.088 59 4.3 0.0 21 47 318 344 311 351 0.84 10 11 1.2 8.4e+02 0.6 0.0 21 43 346 368 339 376 0.78 11 11 2.4 1.6e+03 -0.3 0.0 22 43 375 396 367 400 0.80
Sequence Information
- Coding Sequence
- ATGGAAGGTGGACACTTTAAAATAAAAGAAGAAGGCAGCAATGATAGTGATAGTGTTGTGAGTGTAAAACATAAACCTGTTAGTGATGAAAATGATAAACAATTGTACACAATTAATTATGAAAATATTAAACTTGAAAAAGAATTACATACAGAACTAATTATTAAAGATGAAATATTAGATGAAACTGATTTAGAAGAAAAACCATTTGTATGTGATATTTGTAATAAAACATTTAATGAGAAAAGTAATTTAGTTAGACATAAACGTATTCACAGCGGAGAAAAGCCATTTTCATGTGATGTTTGTAATAAAACATTTTATCAGAAAAGTAATTTAGTTAAACATAAACGTATTCACACCGGAGAAAAACCATTTTCATGTGAAAGTTGTAATAAAACATTTACTGATAAAAGTGATTTAGTTAAACATAAACGTATTCACACCGGAGAAAAGCCATTTTCATGTGAAATTTGTAATAAAACATTTACTCGACAACATCATTTAGCTAGACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAAATATTTAATGTGAAAAGTAATTTAGTTAAACATAACCGTATCCACAGCGGAGAAAAGCCATTCTCATGTGATGTTTGTAATAAAACATTTACTGATAAAAGTGATTTAGTTAAACATAAACGTATTCACAGCGGAGAAAAGCCATTTTCATGTGATGTTTGTAATAAAACATTTTATCAGAAAAGTGATTTAGTTAAACATAAACGTATTCACAGCGGAGAAAAGCCATTTTCATGTGATGTTTGTATTAAAACATTTTATCAGAAAAGTAATTTAGTTAAACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGAAAGTTGTAATAAAACATTTACTCGACAACATCATTTAGTTAGACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAAATATTTAATGTGAAAAGTAATTTAGTTAAACATAAACGTATCCACAGCGGAGAAAAGCCATTCTCATGTGATGTTTGTAATAAAACATTTACTGATAAAAGTGATTTAGTTAAACATAAACGTATTCACAGCGGAGAAAAGACATTTTCATGTGATATTTGTAATAAAACATTTAATGAGAAAAGTAATTTAGTTTCACATAAACGTATTCACAATCGATAA
- Protein Sequence
- MEGGHFKIKEEGSNDSDSVVSVKHKPVSDENDKQLYTINYENIKLEKELHTELIIKDEILDETDLEEKPFVCDICNKTFNEKSNLVRHKRIHSGEKPFSCDVCNKTFYQKSNLVKHKRIHTGEKPFSCESCNKTFTDKSDLVKHKRIHTGEKPFSCEICNKTFTRQHHLARHKRIHTGEKPFSCDVCNKIFNVKSNLVKHNRIHSGEKPFSCDVCNKTFTDKSDLVKHKRIHSGEKPFSCDVCNKTFYQKSDLVKHKRIHSGEKPFSCDVCIKTFYQKSNLVKHKRIHTGEKPFSCESCNKTFTRQHHLVRHKRIHTGEKPFSCDVCNKIFNVKSNLVKHKRIHSGEKPFSCDVCNKTFTDKSDLVKHKRIHSGEKTFSCDICNKTFNEKSNLVSHKRIHNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332720;
- 90% Identity
- iTF_00332759;
- 80% Identity
- iTF_00332759;