Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997755.1:72867920-72869919[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.046 31 5.2 0.0 22 46 117 141 108 144 0.87

2 13 0.016 11 6.6 0.0 21 44 144 167 141 174 0.90

3 13 7.9 5.3e+03 -2.0 0.0 22 43 173 194 168 198 0.79

4 13 0.36 2.4e+02 2.3 0.0 21 43 200 222 192 227 0.78

5 13 0.073 50 4.5 0.0 20 43 227 250 221 255 0.80

6 13 0.046 31 5.2 0.0 21 47 256 282 248 288 0.85

7 13 0.74 5e+02 1.3 0.0 21 41 284 304 281 314 0.78

8 13 9.5 6.4e+03 -2.2 0.0 22 43 313 334 306 341 0.76

9 13 1.7 1.1e+03 0.2 0.1 26 48 389 411 383 417 0.81

10 13 1.8 1.2e+03 0.1 0.0 21 30 440 449 433 459 0.88

11 13 0.14 93 3.6 0.0 21 43 468 490 460 495 0.84

12 13 0.048 32 5.1 0.0 21 44 496 519 492 528 0.85

13 13 5.5 3.7e+03 -1.5 0.0 21 42 524 545 519 548 0.74

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.046	31	5.2	0.0	22	46	117	141	108	144	0.87
2	13	0.016	11	6.6	0.0	21	44	144	167	141	174	0.90
3	13	7.9	5.3e+03	-2.0	0.0	22	43	173	194	168	198	0.79
4	13	0.36	2.4e+02	2.3	0.0	21	43	200	222	192	227	0.78
5	13	0.073	50	4.5	0.0	20	43	227	250	221	255	0.80
6	13	0.046	31	5.2	0.0	21	47	256	282	248	288	0.85
7	13	0.74	5e+02	1.3	0.0	21	41	284	304	281	314	0.78
8	13	9.5	6.4e+03	-2.2	0.0	22	43	313	334	306	341	0.76
9	13	1.7	1.1e+03	0.2	0.1	26	48	389	411	383	417	0.81
10	13	1.8	1.2e+03	0.1	0.0	21	30	440	449	433	459	0.88
11	13	0.14	93	3.6	0.0	21	43	468	490	460	495	0.84
12	13	0.048	32	5.1	0.0	21	44	496	519	492	528	0.85
13	13	5.5	3.7e+03	-1.5	0.0	21	42	524	545	519	548	0.74

Sequence Information

Coding Sequence: ATGGAACATGAAAAACAATTAAATAAAGAATTTATTATTAAAGACGAAATATTTAAAGGAACTGTTTATGAAATAGAACATGTATCAATTAAAAAAGAAATATTAGAAGAACCTGTTGAAATTAAACAGGAAGAAAATCATTGCAATGATTCGATCACAGAATATGAAAATGTTAAACTTGAACAACAATTAAATACAGAATTTGTAATTAAGAACGAAATTTTTAATGATAATGTTTTAGAACATCAACTGATTGATATCGAAGAAAAACATTTTTCATGTGACTCTTGTGAAAAAACATTTAGTTGTAGAAGTAGTTTAAATAGACATAAGCGATTTCATAGTGGAGAAAAACTATTAACATGTGAAGTTTGTGACAAAAAATTTACCCAGATACAACATTTAAATAGACATCTAAAAATACATACTGGGGAAAAACCATTTACATGTGAAATTTGTGATAAAAAATTTAGTGATATAAGTAATTTAAATAGACATAAGCGATTTCATACTGGAGAAAAACTATTAACATGTGAAGTTTGTGAAAAAAAGTTTATTCAGAAAAATGATTTAATAAAACATCAACGAACGCATACTGGTGAAAAACCATTTACATGTGAAGTTTGTGGTAAGAAATTTACTCAGAAGAGCTATCTAATTAAACATAAACGTACGCATACTGGAGAAAAACCCTTTACATGCGAAATTTGTGATAAGAAATTTTCTCAGGCAAGCTATTTAACTACACATAAACGAATGCATACTGGAGAAAAACCATTTACATGTGAATTTTGTGACAAAACATTTTTCCAGAAACAACATTTAAACTCGCATCTAAAAACACATACTGGAGAAAAACCATTTACATGCGAAGTTTGTGATAAGAAATTTTCTGATCATAGCAATTTAGTTGTTCATGGACGAATTCATAAAGGGGAAAAACTTTATTCTTGTGAAATTTGTGATAAAAAGTTTAGTCAAAAACATCATTTAACTGAACATAAACGAAATCATTTTCGAGAAAAACATTTAAATGTGAAGTCTGAAACGGTTACTTTGGAACATGCAGGAATTATTAAAAAAGAGTTTTCAGCGGATATTGTTACTATTGAAAATGTTTTAATTAAAGAAGAAATATCCGAAATATATAAAGATAAGACATTTTCTTGTGAATTCTGTAATAAAAACTTTACACAACAAATAAATCTAATTAGACATAAACGAATCCATACTGGCGAAAAACCCTTTGCATGTGAAGTTTGTGATAAGAAATTTTCTTGTAAACACACTTTAATTCAGCATAATCGAATCCATACTGGAGAAAAACCCTTTACATGCGAGGTTTGTGATAAAAAATTTACTTGGAAAAACGATTTAATTACACATAAACGAACGCATACTGGTGAAAAACCATTTACATGTGAAGTTTGTGATAAAAAATTTACTCAGAAAAGCGATTTAATTAAACATAAACGAATCCATACAGGAGAAAAACCCTTTACATGTGAAGTTTGTGGTAAGAAATTTACTCAGAAATATAATTTAATTCAACATAAACTTATTCATACTGGAGAAAAACCATTTTCATGTGAAGTTTGTAGTAAAAGATTTACTCTGCAAGGTAATTTAATTAAACATAAACGAACACATACTGGCGAAAAACATATTTCACGTGAAGTGATCAAATTTTAA
Protein Sequence: MEHEKQLNKEFIIKDEIFKGTVYEIEHVSIKKEILEEPVEIKQEENHCNDSITEYENVKLEQQLNTEFVIKNEIFNDNVLEHQLIDIEEKHFSCDSCEKTFSCRSSLNRHKRFHSGEKLLTCEVCDKKFTQIQHLNRHLKIHTGEKPFTCEICDKKFSDISNLNRHKRFHTGEKLLTCEVCEKKFIQKNDLIKHQRTHTGEKPFTCEVCGKKFTQKSYLIKHKRTHTGEKPFTCEICDKKFSQASYLTTHKRMHTGEKPFTCEFCDKTFFQKQHLNSHLKTHTGEKPFTCEVCDKKFSDHSNLVVHGRIHKGEKLYSCEICDKKFSQKHHLTEHKRNHFREKHLNVKSETVTLEHAGIIKKEFSADIVTIENVLIKEEISEIYKDKTFSCEFCNKNFTQQINLIRHKRIHTGEKPFACEVCDKKFSCKHTLIQHNRIHTGEKPFTCEVCDKKFTWKNDLITHKRTHTGEKPFTCEVCDKKFTQKSDLIKHKRIHTGEKPFTCEVCGKKFTQKYNLIQHKLIHTGEKPFSCEVCSKRFTLQGNLIKHKRTHTGEKHISREVIKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332728;
90% Identity: iTF_00332728;
80% Identity: iTF_00332728;