Ccar002827.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997759.1:26432569-26434071[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.033 22 5.6 0.0 21 47 121 147 113 153 0.83 2 12 0.83 5.6e+02 1.2 0.1 21 47 149 175 145 180 0.85 3 12 8.1 5.5e+03 -2.0 0.0 26 43 183 200 173 204 0.82 4 12 0.075 50 4.5 0.3 16 43 230 256 216 266 0.76 5 12 1.1 7.3e+02 0.8 0.0 21 46 262 287 252 293 0.80 6 12 0.26 1.8e+02 2.7 0.0 21 43 290 312 283 316 0.87 7 12 0.016 11 6.7 0.1 22 43 332 353 311 358 0.75 8 12 0.024 16 6.1 0.0 21 44 359 382 354 387 0.88 9 12 0.067 45 4.6 0.0 22 46 388 412 385 418 0.85 10 12 0.073 49 4.5 0.0 22 46 416 440 410 446 0.84 11 12 0.15 98 3.6 0.0 21 44 443 466 438 474 0.86 12 12 5.9 4e+03 -1.6 0.0 22 43 472 493 465 497 0.74
Sequence Information
- Coding Sequence
- ATGGAAAAGAAAATGGCAATTAAACTTGAAAATCAAATTAATACAGAACTCATAATTAAAGATGAAATATTAGAAGACAGTGATATTCAATTAGAAAATGAACAAATTAAAGAAGTTAATTTTACAATGGAAGATCGGAAAATTGAGGAAATTAAAAATGAAAAATTAGACAGTGATGTTACAATCAAATTTGAATATATTCATATTGAAAAACAATTAAAAACAGAAATTAAAGAAGAAAAATTAGATGAAAGTGATTTAGAACTATTACATAGTGAAGAAAAACAATTTCCATGTGATGTTTGTGATAAAACATTTAAAAGAAAAAGTTATTTAATTGAACATAAACGTATTCATAGTGGAGAAAATCCATTTTCATGTGATGTTTGTGATAAATCATTTAAAAATAAAAGTAATTTAGTTCGACATAAACGTGTTCATACCGGAGAAAAACCATTTTCATGCGATTCCTGTGATCAAAAATTCAATCAACGTAATGTTCTACTACGACATATTCAACGTTTTCACAGCGTAGGAAAATCATTTTCATGTGATATTTGTGAGAAAACATTTAATCATCAAAGTAATCTAGTTCAACATAAACGTGTTCACATCGGTGATAAAACATTTTCATGTGATATTTGTGAAAAGAAATTTACTCATCATCAGGGTTTATTTCAACATAAACGAATTCACAGTCAAGAAAAACCATTTTCATGTGATATTTGTTGTAAAACATTTAGTCAACGTGGTAATTTTGTTGATCATCAACGGATTCATAGTGGGGAAAGACCATTTTCATGTGATAATTGTGATAAAACATTTATAACTAAAAGTAATTTAGTTCGACATAAACGAATCCATAGTGGAGAAAAACCATTTTCATGTGATGTCTGTGATAAAACATTTAATCAGCTTAATTCTTTAATTCGACATAAATGGATTCATGGTGAAGAAAAACAAAGAATTGAACTTAAATGTATTAATACCGAGGAAAAACTATTTTCATGTGATATTTGTTATGCAACATTTAATCAAGAAAGTCATTTAATTACGCATCAACGTGTTCATACCGGAGAAAAACCCTTTTCATGTGATATTTGTAAGAAAAATTTTAATCAAAAAAGTAATTTAATTAAACATAAACTTCTTCATGGTGGAGAAAAACCATTTTCATGTGATGTTTGTGATAAAAGTTTTAATCAAAAAAGTAATTTAGTTAAACATGAACGTGTTCACGACGGAAAAAAACCATTTTCCTGTGATATTTGTAAGAAAAATTTTAATCAAAAAAGTAATTTAATTAAACATAAACGTGTCCATACTGGAGAAAAACCATTTTCATGTGATATTTGTAAAAAAACATTTAATAATCAAAGTAATTTAGTTCAACATAAACGGATTCATAGCGAAGAAAAACTATTTTCATGTGATATTTGTAATAAAAAATTTAATTATCAAAGTAATTTAATTAAACATAAACGTGTTCACCAAAGAATATAA
- Protein Sequence
- MEKKMAIKLENQINTELIIKDEILEDSDIQLENEQIKEVNFTMEDRKIEEIKNEKLDSDVTIKFEYIHIEKQLKTEIKEEKLDESDLELLHSEEKQFPCDVCDKTFKRKSYLIEHKRIHSGENPFSCDVCDKSFKNKSNLVRHKRVHTGEKPFSCDSCDQKFNQRNVLLRHIQRFHSVGKSFSCDICEKTFNHQSNLVQHKRVHIGDKTFSCDICEKKFTHHQGLFQHKRIHSQEKPFSCDICCKTFSQRGNFVDHQRIHSGERPFSCDNCDKTFITKSNLVRHKRIHSGEKPFSCDVCDKTFNQLNSLIRHKWIHGEEKQRIELKCINTEEKLFSCDICYATFNQESHLITHQRVHTGEKPFSCDICKKNFNQKSNLIKHKLLHGGEKPFSCDVCDKSFNQKSNLVKHERVHDGKKPFSCDICKKNFNQKSNLIKHKRVHTGEKPFSCDICKKTFNNQSNLVQHKRIHSEEKLFSCDICNKKFNYQSNLIKHKRVHQRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332729;
- 90% Identity
- iTF_00332729;
- 80% Identity
- iTF_00332729;