Ccar017060.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:3909722-3911140[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.3 9e+02 0.5 0.0 22 42 109 129 106 134 0.78 2 13 0.049 33 5.1 0.0 21 46 136 161 129 167 0.84 3 13 0.26 1.8e+02 2.7 0.0 21 47 164 190 159 196 0.84 4 13 2.4 1.6e+03 -0.4 0.1 21 38 192 209 185 219 0.71 5 13 0.0025 1.7 9.2 0.1 21 48 220 247 206 253 0.84 6 13 1.3 8.4e+02 0.6 0.1 21 46 248 273 244 280 0.77 7 13 1.7 1.1e+03 0.2 0.0 21 43 276 298 268 306 0.76 8 13 0.18 1.2e+02 3.3 0.0 22 47 305 330 297 336 0.81 9 13 2.3 1.6e+03 -0.3 0.1 20 32 331 343 315 358 0.74 10 13 0.17 1.2e+02 3.3 0.0 21 43 360 382 355 386 0.88 11 13 0.017 11 6.6 0.0 21 48 388 415 382 421 0.85 12 13 1.1 7.5e+02 0.7 0.1 21 43 416 438 411 443 0.80 13 13 0.014 9.6 6.8 0.1 21 44 444 467 436 471 0.87
Sequence Information
- Coding Sequence
- ATGGCAAATAATTCATTTGTTGATACAAATAATTATTTATTTATTAATAAAGATAATATTAAAGTTGAAAAAGAATTACATACAGAACTTATTATTAAAGATGAAATATTAGATGAAACTATTTTAATGGAAGGTGGGCACATTAAAATAAAAGAAGAAGGCAGCAATGATAGTGATAGTGTTGTGAGTGTAAAACATGAACCTGTTAGTGATAAAAATGATAAACAATTGTACACAATTAATTATGAAAATATTAAACTTGAAAAAGAATTACATACAGAACTAATTATTAAAGATGAAATATTAGATGAAACTGATTTAGAAGAAAAACCATTTGTATGTGATATTTGTAATAAAACATTTAATGTGAAAAGTAATTTAGTTATACATAAACGTATTCACAGCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTAAACAGCAAAGTGATTTAGTTAAACATAAACGAATTCATACCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTCAGAAAGGTGATTTAGTTAAACATAAACGAATTCACAGCGGAGAAAAGCCATTCTCATGTGATGTTTGTAATAAAACATTTACTCACCAATATACTTTGGTTAAACATAAACGAATTCACAGCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTCAGAAAAGTAATTTAGTTAGACATAAACGTATTCACAGCGGAGAAAAGCCATTCTCATGTGATGTTTGTAATAAAACATTTACTCACCAACATACTTTAGTTAAACATAAACATATTCATAGTGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTGATAAAAGTGATTTAGTTAAACATAAACGAATTCACAGCGGAGAAAAATCATTTTCATGTGATGTTTGTAATAAAACATTTAAACAGCCAAGTGATTTAGTTAGACATAAACGAATTCACAGCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAAAATTTACTCGTCAACATCATTTAGTTATACATAAACGTATTCACACCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTCAGAAAAGTAATTTAGTTTTACATAAACGTATTCACACCGAAGAAAAGCCATTCTCATGTGATGTTTGTAATAAGACATTTAAACAGCCAAGTGATTTAGTTAGACATAAACGAATTCACAGCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTCTTCAACATCATTTAGTTAGACATAAACGTATTCACAGCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTAAACAGCAAAGTAATTTAGTTCAACATAAACGTATTCACAATCGATAA
- Protein Sequence
- MANNSFVDTNNYLFINKDNIKVEKELHTELIIKDEILDETILMEGGHIKIKEEGSNDSDSVVSVKHEPVSDKNDKQLYTINYENIKLEKELHTELIIKDEILDETDLEEKPFVCDICNKTFNVKSNLVIHKRIHSGEKPFSCDVCNKTFKQQSDLVKHKRIHTGEKPFSCDVCNKTFTQKGDLVKHKRIHSGEKPFSCDVCNKTFTHQYTLVKHKRIHSGEKPFSCDVCNKTFTQKSNLVRHKRIHSGEKPFSCDVCNKTFTHQHTLVKHKHIHSGEKPFSCDVCNKTFTDKSDLVKHKRIHSGEKSFSCDVCNKTFKQPSDLVRHKRIHSGEKPFSCDVCNKKFTRQHHLVIHKRIHTGEKPFSCDVCNKTFTQKSNLVLHKRIHTEEKPFSCDVCNKTFKQPSDLVRHKRIHSGEKPFSCDVCNKTFTLQHHLVRHKRIHSGEKPFSCDVCNKTFKQQSNLVQHKRIHNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332720;
- 90% Identity
- iTF_00332720;
- 80% Identity
- iTF_00332720;