Ccar022980.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:118161725-118163278[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.092 62 4.2 0.1 21 52 107 138 103 140 0.85 2 11 1.3 8.7e+02 0.5 0.1 21 51 135 165 131 168 0.80 3 11 3.9 2.6e+03 -1.0 0.1 21 32 163 174 159 190 0.72 4 11 0.026 18 6.0 0.0 21 48 191 218 187 222 0.85 5 11 0.014 9.4 6.8 0.1 21 46 219 244 215 251 0.89 6 11 0.002 1.3 9.6 0.0 21 51 275 305 268 307 0.87 7 11 0.13 87 3.7 0.1 21 52 303 334 301 336 0.83 8 11 3.1 2.1e+03 -0.7 0.1 21 33 331 343 314 359 0.76 9 11 0.0059 4 8.0 0.0 21 46 359 384 353 387 0.91 10 11 0.0087 5.9 7.5 0.0 21 48 387 414 383 418 0.86 11 11 0.043 29 5.3 0.2 21 46 415 440 411 443 0.90
Sequence Information
- Coding Sequence
- ATGAAGATAGAAAAATCATGTTCCCAGCTGATAATTAAGCATGAAGATAAAGATAATGATGAAATGTTTAAGGAATTGGATTCAAATAATCATAACATGAATGATTATATTGATATTAAGGCGGAAATTATAGAAAAAGAACGAATAAAAATTGAACAAGAATTACATTCAGAGCTAATAATTAAAGACGAATATTACGATGAAGTATTGGAAGTAACTAATCCAGATCATGATAAAAAAGAAAACTATTCTTGTGATGTTTGTGAAAAAACATTTACCCTAAAGAGAACTTTAGTTAATCATATACGAATTCATACTGGGGAAAAACCCTTTACGTGTACTGTGTGTGATAAAAAATTTACCAAAACGGCCCATTTAAATCAGCATATACGAATTCATACTCAGGAAAAACCTTTTTCTTGTTATGTGTGTAATAAAAAATTTACCCATAAGAACAGTTTTGATAGGCATATACGAATTCATACTGGGGAAAAACCTCATTCGTGTACTGTGTGTGATAAAAAATTTACCCTAAAGGACCATTTAAATCAGCATATACGAATTCATACTGGGGAAAAACCTTTTACGTGTAATGTGTGTGATAAAAAATTTACCCGAAGGACCGATTTAAATAGGCATATACGAATTCATACTGGGGAAAAACCTTTTACGTGTAATGTGTGTGATAAAACATTTAACCAAACGGCTAGTTTAAATCAGCATATACGAATTCATACTGGGGAAAAACGTCATTCGTTTACTGTGTGTGATAAAACATTTACCCATAAGATCAGTTTTGATAAGCATATACGAATTCATACTGGGGAAAAACCCTTTACGTGTACTGTGTGTGATAAAAAATTTACCCAAAGGAACGATTTAAATAGGCATATACGAATTCATACTGGGGAAAAACCTTTTACGTGTAATGTGTGTGATAAAAAATTTAACCATAGGAACAGTTTTGATAGGCATATACAAATTCATACTGGGGAAAAACCTCATTCGTGTACTGTGTGTGATAAAAAATTTACCCTAAAGGACCAATTAAATCAGCATATACGAATTCATACTGGAGAAAAACCTTTTACGTGTAATGTATGTGATAAAAAATTTACCCAAAGGACCGATTTAAATAGGCATATACGAATTCATACTGGGGAAAAACCTTTTACGTGTAATGTGTGTGATAAAACATTTAACCAAACGGCTAGTTTAAATCAGCATATACGAATTCATACTGGAGAAAAACCTCATTCGTGTACTGTGTGTGATAAAAAATTTACCCGTAGGAACAATTTAGATAGGCATATACGAATTCATGAGGAAATACCTTACTCGTGTGGCGTAAGGGCTTATACAAAGGGAAAATCATTTAAATGTGATATTTGCTTAAAAATATTAAGCAACAAAATAAGTTTCATGAAACATATACTAATTCATTTAGGACCTCCATATGCATGCCAAAATTGCGATCGAGTTTTTACCCACAAAAACGAATTAAACGATCATGAACATAAAAATCTTGTTATTTTGATTAGCAAAATAAAATGA
- Protein Sequence
- MKIEKSCSQLIIKHEDKDNDEMFKELDSNNHNMNDYIDIKAEIIEKERIKIEQELHSELIIKDEYYDEVLEVTNPDHDKKENYSCDVCEKTFTLKRTLVNHIRIHTGEKPFTCTVCDKKFTKTAHLNQHIRIHTQEKPFSCYVCNKKFTHKNSFDRHIRIHTGEKPHSCTVCDKKFTLKDHLNQHIRIHTGEKPFTCNVCDKKFTRRTDLNRHIRIHTGEKPFTCNVCDKTFNQTASLNQHIRIHTGEKRHSFTVCDKTFTHKISFDKHIRIHTGEKPFTCTVCDKKFTQRNDLNRHIRIHTGEKPFTCNVCDKKFNHRNSFDRHIQIHTGEKPHSCTVCDKKFTLKDQLNQHIRIHTGEKPFTCNVCDKKFTQRTDLNRHIRIHTGEKPFTCNVCDKTFNQTASLNQHIRIHTGEKPHSCTVCDKKFTRRNNLDRHIRIHEEIPYSCGVRAYTKGKSFKCDICLKILSNKISFMKHILIHLGPPYACQNCDRVFTHKNELNDHEHKNLVILISKIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332712;
- 90% Identity
- iTF_00332712;
- 80% Identity
- iTF_00332712;