Ccar016183.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:18595424-18597940[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.064 43 4.7 0.1 20 45 153 178 146 181 0.86 2 8 0.00098 0.66 10.5 0.0 13 44 183 214 179 223 0.89 3 8 0.43 2.9e+02 2.1 0.0 22 49 220 247 215 252 0.81 4 8 0.0016 1.1 9.8 0.1 21 48 247 274 242 278 0.85 5 8 0.02 14 6.3 0.0 21 43 275 297 271 306 0.89 6 8 4.7 3.2e+03 -1.3 0.1 25 44 307 326 302 333 0.81 7 8 0.24 1.6e+02 2.9 0.0 21 45 359 383 353 390 0.82 8 8 0.11 75 3.9 0.0 22 45 388 411 382 415 0.88
Sequence Information
- Coding Sequence
- ATGGCAAATTCATTCCATGATATTCACGAAACACCACATACAGAATTTATAACTGTAAAAAATGAAATATTAGAAGACTTCGAAAGAAACAGTGCTTTTACAGTTGAAGAAACACAAAATAGCAGGAATGATATTAGCATGGAAGGTGAACCAATTCTTAAAACCGAGAAACATTTATCTTTGATCAACCACGAATATATTAAAACTGAAAAACAATTAAAAACAGAATTTATAATAATTAAAGAAGAAAGATTGGAAGACTTTGAAAGCAACAGTGATTTTACACTGGAAGAAACACAAAACAACAGCAGTGATATTAGCACGGGATATGATCAAATTTATAAAGCTGAGCAAGATTTATCTACAATCAACTACGAAAATATTAAACTTGAAAAACAATTAAATACAGAATTAGTTATCAAAGATGAAAGTGTTTTAGAACCAGAACGGGACCACACCACGGAAAAACCATTTGCATGTAATCTTTGTAATCAAACATTTAATCAATTAAGTGCTTTAAGTAAACATCTGCGGACTCATAAAAGTGACAAATCATTCTCACGTGATACAGGAGAAAAGTCATTTTCATGCGTTATTTGTAATAAAATGTTTACTCAACTACGTAATTTACTTAATCACAAACGGATTCATGAAGAAGAAAAATCATTTTCATGTGATATTTGTAATAAGACTTTTACTCAACTAGGTAATTTGCTTAATCACCAAAAGATTCACAGTGAAGAAAAACCATATTTATGTGACATTTGTAATAAATCATTTAATCAGCAAAGTAATTTATCTCGACATAAACGAATTCATAATGGAGAAAAACCATTTTCATGTGATATTTGTGATAAAGCATTTAATCAAGTTGGTAATTTAAATCAACATAAACTGATTCATACGCGAGAAAGGCGATTTTCTTGTGATATTTGTACTAGAACATTCTATCAAGAATGTGATTTAGTTAAACATCAACGAGTTCATGATGATGAAAAATCATTTTCTTGTGATATGTGTAATAAATCGTTTACTTCATCAAGTTATTTAGGTGTGCATAAACGTGTTCACACCGGAGAAAAACCATTTTCATGTGACATTTGTAATAAATCATTTACTAATGGTAGTTATTTAAGTAGACATAAACGTTTTCACACTGGAGATAAACCATTCTCATGTGAGATTTGTAATAAAAAATTTGCTGATGGTAGTAATTTAGCTAGACATAAACGTATGCATACTGCCCCCCTCTAG
- Protein Sequence
- MANSFHDIHETPHTEFITVKNEILEDFERNSAFTVEETQNSRNDISMEGEPILKTEKHLSLINHEYIKTEKQLKTEFIIIKEERLEDFESNSDFTLEETQNNSSDISTGYDQIYKAEQDLSTINYENIKLEKQLNTELVIKDESVLEPERDHTTEKPFACNLCNQTFNQLSALSKHLRTHKSDKSFSRDTGEKSFSCVICNKMFTQLRNLLNHKRIHEEEKSFSCDICNKTFTQLGNLLNHQKIHSEEKPYLCDICNKSFNQQSNLSRHKRIHNGEKPFSCDICDKAFNQVGNLNQHKLIHTRERRFSCDICTRTFYQECDLVKHQRVHDDEKSFSCDMCNKSFTSSSYLGVHKRVHTGEKPFSCDICNKSFTNGSYLSRHKRFHTGDKPFSCEICNKKFADGSNLARHKRMHTAPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332945;
- 90% Identity
- iTF_00332945;
- 80% Identity
- iTF_00332945;