Ccar016105.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:60245019-60246137[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.35 2.4e+02 2.4 0.0 26 44 153 171 148 175 0.86 2 7 0.025 17 6.0 0.0 21 43 176 198 171 203 0.87 3 7 0.00019 0.13 12.8 0.0 21 52 204 235 198 237 0.91 4 7 0.034 23 5.6 0.1 23 44 234 255 227 259 0.87 5 7 0.022 15 6.2 0.1 21 44 260 283 255 287 0.88 6 7 0.0065 4.4 7.9 0.1 21 44 288 311 283 318 0.88 7 7 0.41 2.8e+02 2.1 0.0 21 43 344 366 337 370 0.79
Sequence Information
- Coding Sequence
- ATGGCAAATAATTCATTTGCTAATACAAATAATCATTTGTTTATCAATAAAGAAAATATTAAACTTGAAAAAGAATTACATACAGATATTAAAAATGAAAATGTTGCAATGGAAGTTGTATTAATTAAAACTGAAACACCAGAAGAAGACAGTAATGATATTGATCATGTTATCAGTGTAAAACATGAACCTGTTCATGAAGAAAACGATGAATATTTGTACACAATTAATTATGAAAATCTTAAAGTTGAAAAAGAATTTCGTACAGATTTAATTATTAAAAACCAAACATTAGATCATAATGTTGCAATGGAAGTTGGACAAATTAAAAATGAAATATCAGAAGACAACAGTAATGATTTTAATAGTGTTATTAGTGTAGAACATGAATCTGTTCATGATAATGATAAACATTTGTACACAAATAATATTGTAACTGTTAAAAATAAAACGTTTTCATGTGATATTTGTGATAAAGTATTTAAAATTAAACGTGATCTAGTGCAACATAAAAAAATTCATAGTGAAGAAAAACCATTTTCATGTAAAATTTGTAATAAAACATTTAGTAATCAACGCAATTTAGTTGGACATGAACGGATTCATAGTGGAGAAAAACCATTTTCTTGTGATATTTGTAATAAAACATTTAGTGATAAACGTAATTTAATTAGACATGGACGGATTCATAGCGGAGCAAAACCCTTTTCTTGTGATATTTGTAATAAAACATTTAATCAGCAGAATAATTTAAATAATCATAAACGAATTCATAGCGGAGAAAAACCATTTTCATGTGATATTTGTAATAAAGCATTTAAAATTAAATGTAATTTAGTTCGACATAAACGAATTCATACTGGAGAAAAACCATTTTTATGTAATATTTGTAATAAAATATTTAGTGATCAACGCAATTTAGTTCATCATAAACGGATTCATAGCGGAAAAAAATCATTTTTATGTGATATTTGTAATAAAACATTTATTTACCACCATCATTTAGTTCAACATAAACGAATTCATAGTGGAGAAAGACCATTTTCATGTGATATTTGTGATAAAACATTTAATCAAAAAGGTCATTTAGTTACACATAAACGTATTCACAGTCGATAA
- Protein Sequence
- MANNSFANTNNHLFINKENIKLEKELHTDIKNENVAMEVVLIKTETPEEDSNDIDHVISVKHEPVHEENDEYLYTINYENLKVEKEFRTDLIIKNQTLDHNVAMEVGQIKNEISEDNSNDFNSVISVEHESVHDNDKHLYTNNIVTVKNKTFSCDICDKVFKIKRDLVQHKKIHSEEKPFSCKICNKTFSNQRNLVGHERIHSGEKPFSCDICNKTFSDKRNLIRHGRIHSGAKPFSCDICNKTFNQQNNLNNHKRIHSGEKPFSCDICNKAFKIKCNLVRHKRIHTGEKPFLCNICNKIFSDQRNLVHHKRIHSGKKSFLCDICNKTFIYHHHLVQHKRIHSGERPFSCDICDKTFNQKGHLVTHKRIHSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333078;
- 90% Identity
- iTF_00333078;
- 80% Identity
- iTF_00333078;