Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997755.1:95684000-95686780[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.6e-05 0.0014 19.3 2.3 1 23 78 100 78 100 0.98

2 18 1.7e-06 3.6e-05 24.3 0.7 1 23 106 128 106 128 0.98

3 18 7.5e-06 0.00016 22.3 0.2 1 23 134 156 134 156 0.98

4 18 0.00041 0.0088 16.8 4.1 1 23 162 184 162 184 0.96

5 18 5.9e-06 0.00013 22.6 0.2 1 23 190 212 190 212 0.98

6 18 0.00027 0.0057 17.4 4.0 1 23 218 240 218 240 0.98

7 18 0.00059 0.013 16.3 3.5 1 23 246 268 246 268 0.96

8 18 0.00042 0.0092 16.8 4.5 1 23 274 296 274 296 0.98

9 18 5.3e-06 0.00012 22.8 3.3 1 23 302 324 302 324 0.98

10 18 4.1e-05 0.00089 20.0 0.3 1 23 330 352 330 352 0.98

11 18 7.2e-05 0.0016 19.2 2.9 1 23 358 380 358 380 0.96

12 18 5.6e-06 0.00012 22.7 1.4 1 23 386 408 386 408 0.99

13 18 2.7e-05 0.00059 20.5 1.3 1 23 414 436 414 436 0.99

14 18 0.012 0.27 12.2 1.6 1 23 442 464 442 464 0.95

15 18 0.00033 0.0071 17.1 8.9 1 23 470 492 470 492 0.98

16 18 0.00036 0.0078 17.0 3.0 1 23 498 520 498 520 0.99

17 18 0.0055 0.12 13.3 6.9 1 23 526 548 526 548 0.97

18 18 0.00031 0.0066 17.2 0.5 1 20 554 573 554 575 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.6e-05	0.0014	19.3	2.3	1	23	78	100	78	100	0.98
2	18	1.7e-06	3.6e-05	24.3	0.7	1	23	106	128	106	128	0.98
3	18	7.5e-06	0.00016	22.3	0.2	1	23	134	156	134	156	0.98
4	18	0.00041	0.0088	16.8	4.1	1	23	162	184	162	184	0.96
5	18	5.9e-06	0.00013	22.6	0.2	1	23	190	212	190	212	0.98
6	18	0.00027	0.0057	17.4	4.0	1	23	218	240	218	240	0.98
7	18	0.00059	0.013	16.3	3.5	1	23	246	268	246	268	0.96
8	18	0.00042	0.0092	16.8	4.5	1	23	274	296	274	296	0.98
9	18	5.3e-06	0.00012	22.8	3.3	1	23	302	324	302	324	0.98
10	18	4.1e-05	0.00089	20.0	0.3	1	23	330	352	330	352	0.98
11	18	7.2e-05	0.0016	19.2	2.9	1	23	358	380	358	380	0.96
12	18	5.6e-06	0.00012	22.7	1.4	1	23	386	408	386	408	0.99
13	18	2.7e-05	0.00059	20.5	1.3	1	23	414	436	414	436	0.99
14	18	0.012	0.27	12.2	1.6	1	23	442	464	442	464	0.95
15	18	0.00033	0.0071	17.1	8.9	1	23	470	492	470	492	0.98
16	18	0.00036	0.0078	17.0	3.0	1	23	498	520	498	520	0.99
17	18	0.0055	0.12	13.3	6.9	1	23	526	548	526	548	0.97
18	18	0.00031	0.0066	17.2	0.5	1	20	554	573	554	575	0.94

Sequence Information

Coding Sequence: ATGGTTTTGTTAATTAATTATACCGAAATGTCAAAAGAATTTTACTCAAATAATGATGAAATGGATGAGGATATTGATGAGATGTTGAAAAAATCAAAAATTAAAATTGAACAAGCTTTACATTCGGAATTAATTATAAAAGATGAAGATTTCGACGAAATGTTTAACAGATGTGAATCAGAAAATGATGAAATGTTAAAAGAAATTCACACAAATACACAAGAAGAGCTTTTTTCGTGTGATGTTTGTAACCAAAAATTCAACAAAAAAACTAGCTTGAAAATACATAGACGAGTTCATTCTGGAGAGAAACCTTATTCTTGTAATATTTGTAATAAAACATTCAGAGAAAAAGGTAATCTTGCTGTACATGAACGAAGACATACCGGCGAAAAACCCTATTCATGTGAAATTTGTGATAAAACATTCGCTGCTGCTAGTAATCTAAGTAATCATAAAAAAATTCATAATGGAAAAAAGCCGCATGCATGTGATGTTTGTGACCAAAAGTTCAGAACTAGTACCAAATTAACTTATCATAAACGAACTCATACAGGAGAAAAACCTTACGTATGTGATGTATGTGATAACGCATTCACCACCAACGGCAATTTAGTTAGACATAAACGAATCCATACAGGAGAAAGACCTTATTCTTGTAATGTTTGTAATAAAAAATTCACTCATTCTAAGAGTATGGTTAGACATAAACTTGTTCATTCTGGAGAAAAACCTTATTCTTGTAATATTTGTAATAAAACATTTAAAGATAAATGTTATGTTGCTAGACATAAGCTAGGACATACCGGAGAAAAACGTTATTCTTGTAATATTTGTAATAAAACATTCAGAGATAAATGTTATGTTGCTAGACATAAGCTACGACATACCGGAGAAAAACGTTTTTCTTGTAATATTTGTAATAAAACATTCAGAGATAAATGTAATCTTGCTGTACATGAACGAAGACATACCGGCGAAAAACCCTATTCATGTGAAATTTGTGATAAGACATTCGCTGCTGCTACTGATCTAAGTAAACATAAAAAAATTCATACAGGAAAAAAGCCGCATGCATGTGATGTTTGTGATAAAAAATTCAATGTCAGGTACAATTTAAGTAGTCACAAACGAACTCATACCGGAGAAACACCTTACTCATGTGATGTTTGTAATAAATCATACAGATATAGTGGTGATTTAGTTAAACATAAACGAACACATACTCAAGAAAAACCTTTTAAATGTGAAATTTGTGATCAAAAATTTACTTCGAATTTACTTTTATTGAGACACAAACGAATTCATACAGCAGAAAAATATTTTGATTGTGATGTTTGTGGTAAAATATTCTACCGTAAACATATTTTAGATACTCATAAAATAACTCATACGGGAGAAAGACCTCACTCATGCAATGTTTGTAATAAAACATTTACTCATCACAGCAGCCTATATGTACACAAACGAACTCATACAGGAGAGAAACCATATACATGTGATGTTTGTGACAAAGCATTCAGTCTGAAGCATATTTTAACTAAGCATAAACGAACACATTTAGGAGACAAGCCATATTGTTGTTATGTTTGTCATAGAACATTTAGCATGAAAATAAACTTTGTAAAACATAGAAGAATTCATAGTGATCAAACTCCATATGCGTGTGAAGATTGCGACAGAATATTTACAAATAAAAACGAATTGAATGATCATAAACATCTAAATGTTATTATTTTAATTAAGAAATAA
Protein Sequence: MVLLINYTEMSKEFYSNNDEMDEDIDEMLKKSKIKIEQALHSELIIKDEDFDEMFNRCESENDEMLKEIHTNTQEELFSCDVCNQKFNKKTSLKIHRRVHSGEKPYSCNICNKTFREKGNLAVHERRHTGEKPYSCEICDKTFAAASNLSNHKKIHNGKKPHACDVCDQKFRTSTKLTYHKRTHTGEKPYVCDVCDNAFTTNGNLVRHKRIHTGERPYSCNVCNKKFTHSKSMVRHKLVHSGEKPYSCNICNKTFKDKCYVARHKLGHTGEKRYSCNICNKTFRDKCYVARHKLRHTGEKRFSCNICNKTFRDKCNLAVHERRHTGEKPYSCEICDKTFAAATDLSKHKKIHTGKKPHACDVCDKKFNVRYNLSSHKRTHTGETPYSCDVCNKSYRYSGDLVKHKRTHTQEKPFKCEICDQKFTSNLLLLRHKRIHTAEKYFDCDVCGKIFYRKHILDTHKITHTGERPHSCNVCNKTFTHHSSLYVHKRTHTGEKPYTCDVCDKAFSLKHILTKHKRTHLGDKPYCCYVCHRTFSMKINFVKHRRIHSDQTPYACEDCDRIFTNKNELNDHKHLNVIILIKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332721;
90% Identity: iTF_00332721;
80% Identity: -