Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997758.1:69612861-69615201[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 7.5e-05 0.0016 19.2 2.3 1 23 144 166 144 166 0.98

2 17 7e-07 1.5e-05 25.5 1.1 1 23 172 194 172 194 0.98

3 17 0.00046 0.0099 16.7 4.1 1 23 228 250 228 250 0.96

4 17 9.5e-06 0.0002 22.0 0.2 1 23 256 278 256 278 0.98

5 17 0.00015 0.0033 18.2 3.0 1 23 284 306 284 306 0.98

6 17 0.00081 0.017 15.9 4.1 1 23 312 334 312 334 0.96

7 17 0.0007 0.015 16.1 4.7 1 23 340 362 340 362 0.98

8 17 7e-07 1.5e-05 25.5 1.1 1 23 368 390 368 390 0.98

9 17 6.4e-05 0.0014 19.4 0.1 1 23 396 418 396 418 0.98

10 17 1.7e-05 0.00037 21.2 4.1 1 23 424 446 424 446 0.96

11 17 1.2e-05 0.00026 21.7 0.7 1 23 452 474 452 474 0.99

12 17 3.1e-05 0.00066 20.4 1.3 1 23 480 502 480 502 0.99

13 17 2e-05 0.00043 20.9 2.6 1 23 508 530 508 530 0.97

14 17 2.1e-05 0.00046 20.9 6.4 1 23 536 558 536 558 0.98

15 17 8.7e-06 0.00019 22.1 3.9 1 23 564 586 564 586 0.99

16 17 0.0062 0.13 13.1 6.9 1 23 592 614 592 614 0.97

17 17 0.00035 0.0075 17.1 0.5 1 20 620 639 620 641 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	7.5e-05	0.0016	19.2	2.3	1	23	144	166	144	166	0.98
2	17	7e-07	1.5e-05	25.5	1.1	1	23	172	194	172	194	0.98
3	17	0.00046	0.0099	16.7	4.1	1	23	228	250	228	250	0.96
4	17	9.5e-06	0.0002	22.0	0.2	1	23	256	278	256	278	0.98
5	17	0.00015	0.0033	18.2	3.0	1	23	284	306	284	306	0.98
6	17	0.00081	0.017	15.9	4.1	1	23	312	334	312	334	0.96
7	17	0.0007	0.015	16.1	4.7	1	23	340	362	340	362	0.98
8	17	7e-07	1.5e-05	25.5	1.1	1	23	368	390	368	390	0.98
9	17	6.4e-05	0.0014	19.4	0.1	1	23	396	418	396	418	0.98
10	17	1.7e-05	0.00037	21.2	4.1	1	23	424	446	424	446	0.96
11	17	1.2e-05	0.00026	21.7	0.7	1	23	452	474	452	474	0.99
12	17	3.1e-05	0.00066	20.4	1.3	1	23	480	502	480	502	0.99
13	17	2e-05	0.00043	20.9	2.6	1	23	508	530	508	530	0.97
14	17	2.1e-05	0.00046	20.9	6.4	1	23	536	558	536	558	0.98
15	17	8.7e-06	0.00019	22.1	3.9	1	23	564	586	564	586	0.99
16	17	0.0062	0.13	13.1	6.9	1	23	592	614	592	614	0.97
17	17	0.00035	0.0075	17.1	0.5	1	20	620	639	620	641	0.94

Sequence Information

Coding Sequence: ATGTCAAAAGAATTTTACTCAAATAATGATGAAATGGATGAGGATATTGATGAAACACAAATAGTTGAAAATGACAAAACAAAAATTGAAATAGAGTTACAAACAGGACTAATTTTAATTGATGGATTAACAAATATTGAAAATGGTGAACAAATATTGAAAAAAGAAAAAATTAAAATTGAACAAGAGTTAAATTTACAATTAGTTGATTGCAATGACGAAGAAATATCAAAAGAATTTTATTCAAACCATGATGAAATGGATGAGAATATTGATGAGATGTTGAAAAAATCAAAAATTAAAATTGAACAAGCTTTACATTCGGAATTAATTTTAAAACATGAAGATTTCGACGAAATGTTTAACAGATGTGAATCAGAAAATGATGAAATGTTAAAAGAAATTCACACAAATACACAAAAAGAGCTTTTTTCGTGTGATGTTTGTAACCAAAAATTCAACAAAAAAACTAGCTTGAAAATACATAGACGAGTTCATTCTGGAGAGAAACCTTATTCTTGTAATATTTGTAATAAAACATTCAGAGAAAAATCTAATCTTGCTGTACATGAACGAAGACATACCGGCGAAAAACCCTATTCATGTGAAATTTATGATAAAACATTCGTTGCTGTTGGTGATCTATGTAACCATAAAAAAATTCATAAAGGTAAAAAGCCGCATGCATGTGATGTTTGTGACCAAAAGTTCAGAACTAGTACCAAATTAACTTATCATAAACGAACTCATACAGGAGAAAAACCTTACGTGTGTGATGTATGTGATAACGCATTCACCAGCAACGGCAATTTAGTTAGACATAAACGAATCCATACAGGAGAAAGACCTTATTCTTGTAATGTTTGTAATAAAAAATTCACTCATTCTGAGAGTATGGTTAGACATAAACTTGTTCATTCTGGAGAAAAACCTCATTCTTGTAATATTTGTAATAAAACATTCAGAGATAAATGTTATGCTGCTAGACATATGCTAGGGCATACCGGAGAAAAACGTTATTCTTGTAATATTTGTAATAAAACATTCAGAGATAAATGTTATGTTGCTAAACATAAGCTAAGACATACCGGAGAAAAACGTTATTCTTGTAATATTTGTAATAAAACATTCAGAGAAAAATCTAATCTTGCTGTACATGAACGAAGACATACCGGCGAAAAACCCTATTCATGTGAAATTTGTGATAAAACATTCGCTGCTGCTGGTGATCTAATTACACATAAAAAAATTCATACAGGAAAAAAGGCGCATGCATGTGATGTTTGTGATAAAAAATTCAAATCCAGGTACAATTTAAGTAGTCACAAACGAACTCATACCGGAGAAACACCTTACTCATGTGATGTTTGTAATAAATCATACAGATATAGTGGTGATTTAGTTGTACATAAACGAACACATACTCAAGAAAAACCTTTTAAATGTGAAATTTGTGATCAAAAATTTACTTCGAATTTACTTTTATTGAGACACAAACGAATTCATACAGCAGAAGAATATTTTGATTGTGATGTTTGTGGTAAAATATTCTACCGTAAAGAACATTTAGATACTCATAAAAGAACTCATACGGGAGAAAGACCTCATTCATGCAATGTTTGTAATAAAACATTTACTCAGCACAGCAGCCTAAATATACACAAACGAACTCATACAGGAGAGAAGCCATATACATGTGATGTTTGTGATAAAGCATTCAGTCTGAAGCATACTTTAACTAAGCATAAACGAACGCATTTAGGAGACAAGCCATATTGTTGTTATGTTTGTCATAGAACATTTAGCATGAAAATAAACTTTGTAAAACATAGAAGAATTCATAGTGATCAAACTCCATATGCGTGTGAAGATTGCGACAGAATATTTACAAATAAAAACGAATTGAATGATCATAAACATCTAAATGTTATTATTTTAATTAACAAATAA
Protein Sequence: MSKEFYSNNDEMDEDIDETQIVENDKTKIEIELQTGLILIDGLTNIENGEQILKKEKIKIEQELNLQLVDCNDEEISKEFYSNHDEMDENIDEMLKKSKIKIEQALHSELILKHEDFDEMFNRCESENDEMLKEIHTNTQKELFSCDVCNQKFNKKTSLKIHRRVHSGEKPYSCNICNKTFREKSNLAVHERRHTGEKPYSCEIYDKTFVAVGDLCNHKKIHKGKKPHACDVCDQKFRTSTKLTYHKRTHTGEKPYVCDVCDNAFTSNGNLVRHKRIHTGERPYSCNVCNKKFTHSESMVRHKLVHSGEKPHSCNICNKTFRDKCYAARHMLGHTGEKRYSCNICNKTFRDKCYVAKHKLRHTGEKRYSCNICNKTFREKSNLAVHERRHTGEKPYSCEICDKTFAAAGDLITHKKIHTGKKAHACDVCDKKFKSRYNLSSHKRTHTGETPYSCDVCNKSYRYSGDLVVHKRTHTQEKPFKCEICDQKFTSNLLLLRHKRIHTAEEYFDCDVCGKIFYRKEHLDTHKRTHTGERPHSCNVCNKTFTQHSSLNIHKRTHTGEKPYTCDVCDKAFSLKHTLTKHKRTHLGDKPYCCYVCHRTFSMKINFVKHRRIHSDQTPYACEDCDRIFTNKNELNDHKHLNVIILINK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332733;
90% Identity: iTF_00332733;
80% Identity: -