Basic Information

Insect: Chrysoperla carnea
Gene Symbol: His2A
Assembly: GCA_905475395.1
Location: FR997756.1:93854077-93859302[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.00023 0.0049 17.6 3.3 1 23 43 65 43 65 0.97

2 21 0.00053 0.012 16.5 0.7 1 23 71 93 71 93 0.98

3 21 2.9e-05 0.00062 20.5 3.1 1 23 99 121 99 121 0.97

4 21 1.6e-06 3.4e-05 24.4 2.4 1 23 127 149 127 149 0.98

5 21 3e-05 0.00065 20.4 0.1 1 23 155 177 155 177 0.98

6 21 6.5e-05 0.0014 19.3 0.6 1 23 183 205 183 205 0.98

7 21 0.001 0.022 15.6 0.5 1 23 211 233 211 233 0.98

8 21 1.7e-06 3.7e-05 24.3 3.5 1 23 239 261 239 261 0.98

9 21 0.00014 0.0029 18.3 3.3 1 23 322 344 322 344 0.97

10 21 0.00032 0.0068 17.2 0.8 1 23 350 372 350 372 0.98

11 21 9.9e-07 2.1e-05 25.1 1.4 1 23 378 400 378 400 0.98

12 21 0.00024 0.0052 17.6 0.1 1 23 406 428 406 428 0.98

13 21 5.9e-05 0.0013 19.5 0.6 1 23 434 456 434 456 0.98

14 21 0.00052 0.011 16.5 2.1 1 23 462 484 462 484 0.98

15 21 5.8e-05 0.0013 19.5 0.9 1 23 571 593 571 593 0.98

16 21 1.5e-05 0.00033 21.3 0.7 1 23 599 621 599 621 0.98

17 21 0.00051 0.011 16.5 1.6 1 23 627 649 627 649 0.98

18 21 2.2e-05 0.00048 20.8 3.0 1 23 655 677 655 677 0.98

19 21 8.7e-06 0.00019 22.1 4.1 1 23 712 734 712 734 0.98

20 21 9.7e-05 0.0021 18.8 0.1 1 23 740 762 740 762 0.98

21 21 2e-07 4.3e-06 27.2 1.9 1 23 768 790 768 790 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.00023	0.0049	17.6	3.3	1	23	43	65	43	65	0.97
2	21	0.00053	0.012	16.5	0.7	1	23	71	93	71	93	0.98
3	21	2.9e-05	0.00062	20.5	3.1	1	23	99	121	99	121	0.97
4	21	1.6e-06	3.4e-05	24.4	2.4	1	23	127	149	127	149	0.98
5	21	3e-05	0.00065	20.4	0.1	1	23	155	177	155	177	0.98
6	21	6.5e-05	0.0014	19.3	0.6	1	23	183	205	183	205	0.98
7	21	0.001	0.022	15.6	0.5	1	23	211	233	211	233	0.98
8	21	1.7e-06	3.7e-05	24.3	3.5	1	23	239	261	239	261	0.98
9	21	0.00014	0.0029	18.3	3.3	1	23	322	344	322	344	0.97
10	21	0.00032	0.0068	17.2	0.8	1	23	350	372	350	372	0.98
11	21	9.9e-07	2.1e-05	25.1	1.4	1	23	378	400	378	400	0.98
12	21	0.00024	0.0052	17.6	0.1	1	23	406	428	406	428	0.98
13	21	5.9e-05	0.0013	19.5	0.6	1	23	434	456	434	456	0.98
14	21	0.00052	0.011	16.5	2.1	1	23	462	484	462	484	0.98
15	21	5.8e-05	0.0013	19.5	0.9	1	23	571	593	571	593	0.98
16	21	1.5e-05	0.00033	21.3	0.7	1	23	599	621	599	621	0.98
17	21	0.00051	0.011	16.5	1.6	1	23	627	649	627	649	0.98
18	21	2.2e-05	0.00048	20.8	3.0	1	23	655	677	655	677	0.98
19	21	8.7e-06	0.00019	22.1	4.1	1	23	712	734	712	734	0.98
20	21	9.7e-05	0.0021	18.8	0.1	1	23	740	762	740	762	0.98
21	21	2e-07	4.3e-06	27.2	1.9	1	23	768	790	768	790	0.98

Sequence Information

Coding Sequence: ATGAATCAAATATTTATTAAAGAAGAAACATCACAAGAAAGTGATAAAATGGAACTAATTACAACTGAATATGAAACCGATAAATCAGAAGTAAAAAGCTCTTCAAAAACTACGCAAAACAAACCATATTCATGTAATTTTTGTGACAAAAGATATAACGATCGAAGAAATTTAAGAAATCATAATCGATTACACACGGGAGAAAAACTATTTCCCTGTGACGTCTGTGATAAAACATTTATCCAAGTCCACAGATTAATTGAACATAAACGAATTCATACCGGGGACAAACCATTTTCATGTGAAGTTTGTGATAGAAAATTTACTCATCAAAGCACGTTAATACGACATAAAGTTACTCATACGGGTGAAAAATCATTTTCATGTGATGTTTGTGACAAAAAATTTACTCAACAAAGTACTTTAAAACAACATAAACGAATTCATACGGGAGAAAAAGGATTTCCTTGTGATGTCTGTGAAAAAGCATTTGTTCAAGAAAATAATTTAATTGAACATAAACGAACTCATACGGGTGAAAAACCATTTTCATGTGATGTGTGTGACAAAAAGTTTTCTCAATTACAAGGTTTAGTGCAACATAAAAGGATTCATAATGGTGAAAAACCATTTTCTTGTGATATTTGTGATCGAAAATTTAGTTGGCGTGGTAGTTTAATTGTGCATAAACGATCTCATACGGATGAAAAATCATTTTCATGTGGATTTTGTGATAAGAAATTTTCACATCCAAGTAGTTTAACGAAACATCAAAGAATTCACAACCAAGAAGATTTTATGGGTGGGGAAGAAAATGATTTTATTAAGGAAGAAAAATCTATGAAAAGTGAACTAATTGAAGAGGGAAATGTACAAGAAGAAGTAAATTTGGAGGAAGTTATGATTAAAGAGGAAGCATTAGAAGAAAATGACTCCGAATTAGAGGTGAAAAAAACTAAACCACATTCATGTGATTTTTGTGAAAAAAGTTATAAAAATCGAAGAAATTTAATTGTCCATCAACGACTTCATACCGGTGAAAAACCATTTTCATGTGATGTGTGTGATAAAAGATTTTCGCTACTTCAAAGTTTAGTTCAACATAAACGAATCCATACGGGTGAAAAACCATTTTCTTGTGAAATTTGTGATAAAAAATTTACGCAACAAAGTACGTTAATACAGCATAAACGTATTCACACGGGAAAAAAACCATTTTCATGTGATTTCTGTGCGAAAGCATTTGTTCAAGAAAATAATTTAATTGATCATTTGAGAGTTCATACTGGTGAAAAACCATTTTCATGTGAGGTGTGTGATAAAACATTTTCTCAGCTTCAAGGTTTAGTTCAGCATAAAAGGTTACATACGGGTGAAAAACCATTTTCTTGTGAAATTTGTAATCGAAAATTTACTTGGCAAGGAAGTTTAACGAAACACAAAAAAACTCATCTCCAAGGACAATCAATCGATGAAGAATTTGAAGAGAAAATTGATGAAAAAATGGAAAACTGTAATAAATTTGAAGAAATAATTACGAAAAGTGGACTAATTGAAGAAGGAAATGTACAAGAAAGAGTAAATTTGGAGCAAGTATTAATTAAAGAGGAAATATTAGAAGACCAGGACACAATGGAACTGAAACTGAAAGATCGAACAACAGAACAATTAGAGATTAGAACTGTTTCAAAAGGTCAAATAAATAAAAAATATTCCTGTGATTTATGTGCGAAAAGATTTAAAAATCGACGAAATTTAATTGGGCATCAACGAATTCATACCGGTGAAAAACCATTTTCATGTGAGATATGTAATAAAACATTTTCTCAACTTCAAGGTTTAATTCAACATAAAAGGATTCATACTGGTGAAAAACCATTTTCTTGTAAAATTTGTGATCGAAAATTTAGTTGGCGAAGTAGTTTAATTGAACATAAACGATCTCATACGGATGAAAAATCATTTTCATGTGACATTTGTCATAGAAAATTTATTAATCCACGCAGTTTAACGCGACATAAAAGAATTCACATCGAAGGCGAAAATGAAGAAAATGGTTTAATTAAAGAAAAACTTTTTGATGAAAAACATGAAAACTGTAATACATTTGTCAGTGAAAGTGGTCAAATATATTTTTCTTGTGAAATTTGTGATAAAAAGTTTAAACATCGAACGAATTTAACAGCTCATAAACGACTTCATTCTGGGAAACGATTATTTTCCTGTGAAGTGTGTAATAAAGTTTTTATCCAAGAAAACAGTTTAATTGAACATGAACGGATTCATACTGGTGAAAAACCATTTACCTGTGAAATCTGTGATAAAAATTTTACACAACAAAGTTCTTTAAATCGACATAAAAGAATTCACATCAAAGAAGATTCTATCGATGAAGTATTTCAAGAAGCAAACGATTTAATTAAAGAAGAACCAATTGAGAGTGATGAAAACCTTGAAAACTATAATGAAATTGAAGAAAACTTTAAGAATAATGAAATTGTTTTAGAAAGAAATATTGGAATAAAAGAAGAAATAAATTTTGATCAAGCAAAAGTTAAAGGAAGTAAAGTTAAAGGAAAGGCAAAATCCCGTTCCAATCGAGCAGGACTTCAGTTTCCCGTCGGAAGAATCCATAGATTATTGAGGAAAGGCAATTATGAGGAACGAGTTGGTGCCGGGGCACCTGTATATTTAGCAGCTGTAATGGAATATTTGGCCGCTGAAGTTTTGGAATTGGCGGGAAATGCAGCAAGAGACAACAAAAAAACAAGAATTATAAACTATAGCTCATTTCACATTATACGTTTTGATCGAACGGAAAAAACATCCCATCGAACGTCGCTCCAAAGTCGTATCTCACGGTAA
Protein Sequence: MNQIFIKEETSQESDKMELITTEYETDKSEVKSSSKTTQNKPYSCNFCDKRYNDRRNLRNHNRLHTGEKLFPCDVCDKTFIQVHRLIEHKRIHTGDKPFSCEVCDRKFTHQSTLIRHKVTHTGEKSFSCDVCDKKFTQQSTLKQHKRIHTGEKGFPCDVCEKAFVQENNLIEHKRTHTGEKPFSCDVCDKKFSQLQGLVQHKRIHNGEKPFSCDICDRKFSWRGSLIVHKRSHTDEKSFSCGFCDKKFSHPSSLTKHQRIHNQEDFMGGEENDFIKEEKSMKSELIEEGNVQEEVNLEEVMIKEEALEENDSELEVKKTKPHSCDFCEKSYKNRRNLIVHQRLHTGEKPFSCDVCDKRFSLLQSLVQHKRIHTGEKPFSCEICDKKFTQQSTLIQHKRIHTGKKPFSCDFCAKAFVQENNLIDHLRVHTGEKPFSCEVCDKTFSQLQGLVQHKRLHTGEKPFSCEICNRKFTWQGSLTKHKKTHLQGQSIDEEFEEKIDEKMENCNKFEEIITKSGLIEEGNVQERVNLEQVLIKEEILEDQDTMELKLKDRTTEQLEIRTVSKGQINKKYSCDLCAKRFKNRRNLIGHQRIHTGEKPFSCEICNKTFSQLQGLIQHKRIHTGEKPFSCKICDRKFSWRSSLIEHKRSHTDEKSFSCDICHRKFINPRSLTRHKRIHIEGENEENGLIKEKLFDEKHENCNTFVSESGQIYFSCEICDKKFKHRTNLTAHKRLHSGKRLFSCEVCNKVFIQENSLIEHERIHTGEKPFTCEICDKNFTQQSSLNRHKRIHIKEDSIDEVFQEANDLIKEEPIESDENLENYNEIEENFKNNEIVLERNIGIKEEINFDQAKVKGSKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYEERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIINYSSFHIIRFDRTEKTSHRTSLQSRISR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332655;
90% Identity: iTF_00332655;
80% Identity: -