Ccar018924.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:1946785-1949394[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00022 0.0047 17.7 2.8 1 23 58 80 58 80 0.97 2 21 0.00048 0.01 16.6 0.7 1 23 86 108 86 108 0.98 3 21 2.6e-05 0.00055 20.6 3.1 1 23 114 136 114 136 0.97 4 21 1.4e-06 3e-05 24.6 2.4 1 23 142 164 142 164 0.98 5 21 2.7e-05 0.00058 20.5 0.1 1 23 170 192 170 192 0.98 6 21 5.8e-05 0.0013 19.5 0.6 1 23 198 220 198 220 0.98 7 21 0.00093 0.02 15.7 0.5 1 23 226 248 226 248 0.98 8 21 2.4e-06 5.3e-05 23.8 4.0 1 23 254 276 254 276 0.98 9 21 0.00012 0.0026 18.5 3.3 1 23 337 359 337 359 0.97 10 21 0.00028 0.0061 17.3 0.8 1 23 365 387 365 387 0.98 11 21 8.9e-07 1.9e-05 25.2 1.4 1 23 393 415 393 415 0.98 12 21 4.4e-05 0.00096 19.9 0.2 1 23 421 443 421 443 0.98 13 21 5.3e-05 0.0011 19.6 0.6 1 23 449 471 449 471 0.98 14 21 0.00042 0.0091 16.8 2.0 1 23 477 499 477 499 0.98 15 21 8.9e-05 0.0019 18.9 1.5 1 23 582 604 582 604 0.98 16 21 1.4e-05 0.00029 21.5 0.7 1 23 610 632 610 632 0.98 17 21 0.00046 0.0099 16.7 1.6 1 23 638 660 638 660 0.98 18 21 2e-05 0.00043 21.0 3.0 1 23 666 688 666 688 0.98 19 21 7.9e-06 0.00017 22.2 4.1 1 23 723 745 723 745 0.98 20 21 8.7e-05 0.0019 18.9 0.1 1 23 751 773 751 773 0.98 21 21 1.8e-07 3.9e-06 27.4 1.9 1 23 779 801 779 801 0.98
Sequence Information
- Coding Sequence
- ATGGCAAATAATTTATTTCAAGATGGAACTGAAAATGAATTAGATTTGCAGCAAATATTTATTAAAGAAGAAATATCACAAGAAACTGATAAAATGGAACTAATTACAACTGAATATGAAACCGATAAATCAGAAGTAAAAAGTTCTTCAAAAACTACGCAAAACAAACCATATTCATGTGATTTTTGTGACAAAAGATATAACGATCGAAGAAATTTAAGAAATCATAATCGACTACATACGGGAGAAAAGCTATTTCCCTGTGACGTCTGTGATAAAACATTTATCCAAGTCCACAGATTAATTGAACATAAACGAATTCATACCGGGGACAAACCATTTTCATGTGAAGTTTGTGATAGAAAATTTACTCATCAAAGCACGTTAATACGACATAAAGTTACTCATACTGGTGAAAAATCATTTTCATGTGATGTTTGTGACAAAAAATTTACTCAACAAAGTACTTTAAAACAACATAAACGAATTCATACGGGACAAAAAGGATTTCCATGTGATGTTTGTGAGAAAGCATTTGTCCAAGAAAATAATTTAATTGAACATAAACGAACTCATACGGGTGAAAAACCATTTTCATGTGATGTGTGTGACAAAAAGTTTTCTCAGTTACAAGGTTTAGTGCAACATAAAAGGATTCATAATGGAGAAAAACCATTTTCTTGTGATATTTGTGATCGAAAATTTAGTTGGCGTGGTAGTTTAATTGTGCATAAACGATCTCATACGGATGAAAAATCATTTTCATGTGGATTTTGTGATAAGAAATTTTCACATCCAAGTACTTTAAAGAAACATCAAAGAATTCACAACCAAGAAGATTTTATGGGTGGGGATGAAAATGATTTTATTAAGGAAGAAAAATCTATGAAAAGTGAACTAATTGAAGAGGGAAATGTACAAGAAGAAGTAAATTTGGAGGAAGTTATGATTAAAGAGGAAGCATTCGAAGAAAATGACTCCGAACTAGATGTGAAAAAAACTAAACCACATTCATGTGATTTTTGTGAAAAAAGTTATAAAAATCGAAGAAATTTAATTGTCCATCAACGGCTTCATACCGGTGAAAAACCATTTTCATGTGATGTGTGTGATAAAAGATTTTCACTACTTCAAAGTTTAGTTCAACATAAACGAATCCATACGGGTGAAAAACCATTTTCTTGTGAAATTTGTGATAAAAAATTTACGCAACAAAGTACGTTAATACAACATAAACGTATTCACACGGGAAAAAAACCATTTTCATGTGATTTCTGTGAGAAAGCATTTGTTCAAGAAAATAATTTAATTGATCATTTGAGAGTTCATACTGGTGAAAAACCATTTTCATGTGAGGTGTGTGATAAAACATTTTCTCAGCTTCAAGGTTTAGTTCAGCATAAAAGGTTACATACGGGTGAAAAACCATTTTCTTGTGAAATTTGTAATCGAAAATTTAGTTGGCAAGGAAGTTTAACGAAACACAAAAAAACTCATCTCCAAGGACAATCCATCGATGAAGAGAAAATTGATGAAAAAATGGAAAACAGTAATAAATTTGAAGAAATAATTACGAAAAGTGGACTAATTGAAGAAGGAAATGTACAAGAAGAAGTAAATTTGGAGCAAGTATTAATTAAAGAGGAAATATTAGGAGACCAGGACACAATGGAACTTCTGAAAGATCGAACAACCGAACAATTAGAAGTTAGAACTGTTTCAAAATATCAAAAAAATAAAAAATATTCATGTGATTTTTGTGCGAAAAGATTTAAAAATCGACGAAATTTAATTGGGCATCAACGAATTCATACCGGAGAAAAACCATTTTCATGTGAGATATGTAATAAAACATTTTCTCAACTTCAAGGTTTAATTCAACATAAAAGGATTCATACTGGTGAAAAACCATTTTCTTGTAAAATTTGTGATCGAAAATTTAGTTGGCGAAGTAGTTTAATTGAACATAAACGATCTCATACGGATGAAAAATCATTTTCATGTGACATTTGTCATAGAAAATTTATTAATCCACGCAGTTTAACGCGACATAAAAGAATTCACATCGAAGGCGAAAATGAAGAAAATGGTTTAATTAAAGAAAAACTTGTTGATGAAAAACATAAAAACTGTAATAAAATTGTCAGTGAAAGTGGTCAAATATATTTTTCTTGTGAAATTTGTGATAAAAAGTTTAAACATCGTACAAATTTAACAGCTCATAAACGACTTCATTCTGGAAAACGATTATTTTCCTGTGAAGTTTGTAATAAAGTTTTTATCCAAGAAAACAGTTTAATTGAACATGAACGGATTCATACTGGTGAAAAACCATTTACCTGTGAAATCTGTGATAAAAATTTTACACAACAAAGTTCTTTAAATCGGCATAAAAGAATTCACATCAAAGAAGATTCTATCGATGAAGTCTTTCAAGAAGCAAACGATTTAATTAAAGAAGAACCAATTGAGAGTGATGAAAACCTTGAAAACTACGGTGAAATTGAAGAAAACTTTAAGAATAATGAAATTATTTTAGAAAGAAATATTGGAATAAAAGAAGAAATAAAATTTGATCAAGTATTGATTAAAGAAGAAATACAATTTTAA
- Protein Sequence
- MANNLFQDGTENELDLQQIFIKEEISQETDKMELITTEYETDKSEVKSSSKTTQNKPYSCDFCDKRYNDRRNLRNHNRLHTGEKLFPCDVCDKTFIQVHRLIEHKRIHTGDKPFSCEVCDRKFTHQSTLIRHKVTHTGEKSFSCDVCDKKFTQQSTLKQHKRIHTGQKGFPCDVCEKAFVQENNLIEHKRTHTGEKPFSCDVCDKKFSQLQGLVQHKRIHNGEKPFSCDICDRKFSWRGSLIVHKRSHTDEKSFSCGFCDKKFSHPSTLKKHQRIHNQEDFMGGDENDFIKEEKSMKSELIEEGNVQEEVNLEEVMIKEEAFEENDSELDVKKTKPHSCDFCEKSYKNRRNLIVHQRLHTGEKPFSCDVCDKRFSLLQSLVQHKRIHTGEKPFSCEICDKKFTQQSTLIQHKRIHTGKKPFSCDFCEKAFVQENNLIDHLRVHTGEKPFSCEVCDKTFSQLQGLVQHKRLHTGEKPFSCEICNRKFSWQGSLTKHKKTHLQGQSIDEEKIDEKMENSNKFEEIITKSGLIEEGNVQEEVNLEQVLIKEEILGDQDTMELLKDRTTEQLEVRTVSKYQKNKKYSCDFCAKRFKNRRNLIGHQRIHTGEKPFSCEICNKTFSQLQGLIQHKRIHTGEKPFSCKICDRKFSWRSSLIEHKRSHTDEKSFSCDICHRKFINPRSLTRHKRIHIEGENEENGLIKEKLVDEKHKNCNKIVSESGQIYFSCEICDKKFKHRTNLTAHKRLHSGKRLFSCEVCNKVFIQENSLIEHERIHTGEKPFTCEICDKNFTQQSSLNRHKRIHIKEDSIDEVFQEANDLIKEEPIESDENLENYGEIEENFKNNEIILERNIGIKEEIKFDQVLIKEEIQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332656;
- 90% Identity
- iTF_00332656;
- 80% Identity
- -