Ccar016523.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:73877550-73879382[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.2e-11 5.8e-08 32.7 0.0 2 37 15 50 14 56 0.91
Sequence Information
- Coding Sequence
- ATGTCGACTTCACAATCAACCAAGAAACGAAAAATCTGGAATGAAGAAAAAATGGCAGAAGCTATAAAGGTCGTCCGGGCAAAGAAAATGGGGTATTTTAAAGCGGCTCAGCATTTTCAAGTGCCTAGGACAACTTTATTTCGTTTATGCCAAGTAGATGAACAGTCTCCAGAAGTGGCAGCAGCTACTACATTAGGACGGAAAACTATATTGGGCTTCAAACTCGAACGCCAGCTAGTAGAATACATATTAATGATGGAGAGCAAGTTTCATGGTTTAACAAGAATTGATTTTCGCCGTATGGCGTACATGCGAGCAAAGCGAAATAATTTGCAGAATCCGTTCGTACAAACAGGTGAAATTGCAGCTAACGGGTTCAAAGCCACTGGACTATGGCCTTTAAATAAAAATGTGTTCAGTGATGTGGATTTTATTTCTGCGCAACAAAATGCTGTAAAAGACGGTTGTACAACCAATGTCACTCCACCGGAATCAAAATCTGAAACTGGTCAAGTTCTGATAGAAATACCTGTACCAGAAACAACTGCTAATGTACAACCTGAACCTGTACCGTCAACTTCCGGACTTAGTCGTAGCAGTTTGGGTCTAGTGTCTCCATATGCTATAAGTCCATTGCCTGAGAAACGAAGAAAAGTATCTAACAGAGGAAGAAAAGCTGCTGTTGCAACAGTCATAACATCTTCACCGAACAAAAATGATTTAGTAAATAAAAATATGAAGAGACGAGAAAAAGAAGTCAAGAGAAAAACTAAAAAGAAAACTGCGAAAAGGAACAAACAAACGAAGGAAAATAAGGACGACACGGACGAAGAAGACTCTGAGGAACAGGATGTTATCCGGTTTGATGATGGCAGTGAACATGATGAGTTGATGGACCAAGTATCTCCTGACTCTGCTGATGCTGAATGTATGTTCTGTTCGAGACTTTTTTCTATGGATGAACGTGGAGAAAGCTGGATAAAATGCTTAATGTGTGGGCTCTGGGCACATTATGATTGTGCGGGTCCAGAGTTTGATACTTGGATCTGTGACTTTTGCAAGTGA
- Protein Sequence
- MSTSQSTKKRKIWNEEKMAEAIKVVRAKKMGYFKAAQHFQVPRTTLFRLCQVDEQSPEVAAATTLGRKTILGFKLERQLVEYILMMESKFHGLTRIDFRRMAYMRAKRNNLQNPFVQTGEIAANGFKATGLWPLNKNVFSDVDFISAQQNAVKDGCTTNVTPPESKSETGQVLIEIPVPETTANVQPEPVPSTSGLSRSSLGLVSPYAISPLPEKRRKVSNRGRKAAVATVITSSPNKNDLVNKNMKRREKEVKRKTKKKTAKRNKQTKENKDDTDEEDSEEQDVIRFDDGSEHDELMDQVSPDSADAECMFCSRLFSMDERGESWIKCLMCGLWAHYDCAGPEFDTWICDFCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332273; iTF_01064577; iTF_01064578; iTF_01064579; iTF_01064580; iTF_01064581; iTF_01064582; iTF_01064583; iTF_01064584; iTF_01064585; iTF_01064587; iTF_01206491; iTF_01064576; iTF_01506278; iTF_01206487; iTF_01206488; iTF_01206489; iTF_01206490; iTF_00935643; iTF_01064575; iTF_01192597;
- 90% Identity
- iTF_00332273;
- 80% Identity
- -