Ccar002491.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997759.1:8681256-8684490[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.6e-11 7.8e-08 32.3 0.0 3 41 16 54 14 56 0.94
Sequence Information
- Coding Sequence
- ATGACGGAGCCTAAAGCTAAAATTAAATATTATAATTGGAACACAGAGGACCTAGAAAGAGCTATTGCGGCTTACGCAAATAAAGAATTAAGTTTAAACAAAATTTCAAAGACTTATTCTATTCCAAAACCAACAATTCTACGGCATATAAAAAATAAAAATAAGATTGCAGTTGATACCAAAATCCAAAAAGGGAGACCGGTTATATTAGATATCGAAACAGAAAATATGTTGGCTGAGCATATTCTTCATCTCGAAACACACATGTTTGGTCTAACAATCAGCGATATTCGACGTCTCGCATTCGAAATTGCTGAAATCCATAACATTCAGAATAATTTCAATAAAGAAAAACGCATGGCTGGCAAAGCATGGTTCTACAAATTTATGAAAAGGCACCCACAGCTAAGTGTTCGACAACCTGAAAACACATCCTTGAATAGAATTAAAGGATTTAATAGAGAAAATGTGTTTCACTTTTTTGATTTATTAGAGAAGATTGTAGATGAAAATGGCATAGAACCTACCAATATCTTCAATGTAGACGAAAGTGGATTTTCAACCGTCCAAAAGAAAGCTCAAAAAATTGTAGGACAAAAGGGAAAGAAGCAAATTGGTGCCGCTATTAGTGGAGAAAGAGGTGTCAATACCACGGCGGTATGCTGCGCTAGTGTTTCCGGCCAGTTTATTCCTCCAATGCTAATATTTAAAAGGGCAAGACAAAATCCAGAACTAGCAAATGATGCTCCTTTAGGCAGTATTGTTACTGTTTCTGAAAGCGGCTACATTAACTCTGCCCTCTTTGTGGAATGGTTGAAGCACTTTATTAAAATTGTGAAACCCACGCCTGAAAAGAAAGTTCTGGTACTTTTGGATGGGCATACGACACACTCAAAAAATCTCGAAGCTCTGTGTTTAGCAAAAGATAATGGAATAATACTGTTACAACTACCAGGTCATACGACAAACCGAATTCAGCCTCTTGACGTATCATTTTTCAAACCCCTGAGTACTTATTATATCCAGAGCACAGAAAAATGGTTGAGAACCAATCCTGGGCGACAAGTGACACAATACCAGATTGCTCAATTATTTGGAGAAGCCTATGAAAGAGCCGCAGTGATTGGGAATATAGTAAATGGATTCAGAGCTAGTGGAATTTGGCCTATAAACCGACATGTTTTTCCAGAACATATGTTTGAGGCTGCTGACAATTTATTAGCCGCTGAAACAATGAATTCGAGCAATGAGAGTGTATCAGTGTTACAACATTTTACAGAATCGGAAACAAAAGATGTCCTAAAGGAAAAAGAAAAGATAGAAGAAAAAGTTGAAAAGGAAAACCACGATAAAGAAAATGACAATAAAGAGAAAGGCGGTAAAGAAAATGACATTAATGAAAAAGAGCATTTGATTTCTTGTGTTGCTGAAATACATGCACAACCATCGACGCCGAAAAAAACACATATTCCACCAAATACTACTCCTGCTGATATTAAAAAAACAATAAAAGTTTTATCACCACTGCCCAAAAACACATTGAAAAAAAAGAGAACTATACAAAAAGCTATTGAAATCACATCAAGCCCATATAAAAATCAACTAGAAGAGAAGCAAAAGAAAGTCAAAGTAAAGAAAGAAAAGATTGGTAAACCAAAGAAACACCAAACGGTAAAAAAAGAAAATGAGGTAACAGCTGTACCCAAAGCCAAGTGCAAAAGTTACAAGAGGAAACGATCTCCTTCCATCACTAGTAGCGATGATTCAGGAGAGACACTTGCTGTAGAACTAGATGATGATGATGACAGCGATGATGATCTTGAAAATATATGTGGAAAGTGCAATCGTTCTTACTACGATAAGAAAGGTCCAAAAGTTGATTGGATTCAATGCGTTCGCTGTAAACGGTGGCTTCATGAGACCTGTACTTCGAATCCAGACATTTGTGATGATTGTTTCCAATAA
- Protein Sequence
- MTEPKAKIKYYNWNTEDLERAIAAYANKELSLNKISKTYSIPKPTILRHIKNKNKIAVDTKIQKGRPVILDIETENMLAEHILHLETHMFGLTISDIRRLAFEIAEIHNIQNNFNKEKRMAGKAWFYKFMKRHPQLSVRQPENTSLNRIKGFNRENVFHFFDLLEKIVDENGIEPTNIFNVDESGFSTVQKKAQKIVGQKGKKQIGAAISGERGVNTTAVCCASVSGQFIPPMLIFKRARQNPELANDAPLGSIVTVSESGYINSALFVEWLKHFIKIVKPTPEKKVLVLLDGHTTHSKNLEALCLAKDNGIILLQLPGHTTNRIQPLDVSFFKPLSTYYIQSTEKWLRTNPGRQVTQYQIAQLFGEAYERAAVIGNIVNGFRASGIWPINRHVFPEHMFEAADNLLAAETMNSSNESVSVLQHFTESETKDVLKEKEKIEEKVEKENHDKENDNKEKGGKENDINEKEHLISCVAEIHAQPSTPKKTHIPPNTTPADIKKTIKVLSPLPKNTLKKKRTIQKAIEITSSPYKNQLEEKQKKVKVKKEKIGKPKKHQTVKKENEVTAVPKAKCKSYKRKRSPSITSSDDSGETLAVELDDDDDSDDDLENICGKCNRSYYDKKGPKVDWIQCVRCKRWLHETCTSNPDICDDCFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00985971;
- 90% Identity
- iTF_00821720;
- 80% Identity
- -