Cruf000517.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- stc
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010000919.1:9275-14526[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2 1.8e+04 -4.1 1.6 15 19 584 588 583 588 0.81 2 13 0.059 5.2e+02 0.8 0.2 4 10 617 623 616 624 0.95 3 13 2.6e-05 0.23 11.5 16.1 4 19 631 646 629 646 0.91 4 13 2.1e-07 0.0018 18.2 13.2 3 19 684 700 682 700 0.91 5 13 2.8e-05 0.24 11.4 19.3 1 19 740 758 740 758 0.98 6 13 1.5e-05 0.13 12.3 14.4 4 18 806 820 799 821 0.86 7 13 0.0069 61 3.8 9.3 1 11 861 871 861 872 0.96 8 13 2 1.8e+04 -4.5 1.1 4 10 876 882 876 882 0.58 9 13 4.8e-10 4.3e-06 26.6 15.5 1 18 888 905 888 906 0.97 10 13 1.7 1.5e+04 -3.9 0.9 6 10 935 939 935 940 0.81 11 13 2 1.8e+04 -7.7 10.0 10 18 953 962 942 963 0.76 12 13 6.8e-08 0.0006 19.8 14.7 1 16 999 1014 999 1024 0.92 13 13 3.9e-07 0.0035 17.3 13.8 1 19 1031 1050 1031 1050 0.96
Sequence Information
- Coding Sequence
- ATGTCGACAGATTCTAAATCTCAGTCTTCAAATCAACCACCTTTATCACAGCTATGGCCGGGTTTTGGTTCTACAACATCCGACCTTAGCACTCAACTGGAGCACCAGCACTCTGCCACAAATCCGGCTTTGGGTAAACATCCACAACACCAGCAGCCAGTGAATAATAACAATAATTATGTTAATTTTAATCAATTCATAATGCAACATAATCTTGCATCGCCACATCAAACAAAACCAGAGGGTTTTGCTCGTGGAGAAGGCCAAAATTCTAATTATGATGATGTTTTTAATTTTATTCATAATATGGGTAATGTTAATAATAATAACAACAACAATAATGCAAAAGGTAATAATTCAGGCAGCATCAATTCTAATCATCGTCAGCATCAGCCGCAACAACAACAGCAACATTATAATTATTTCAATCCCTCATTACCCCAATATCAATTTGCCAACTATAATAATCAAATTGTTCCTGGCGTTAGCAACAACAATAACAACAGTGTATTTTCTGATGGTTTACAAAACTACAACCTACACTCGAATACATCGACTAGTATACCATCTTCATCAAACAACCAACAATATTATGATACTCCCAATTCATATGCCAACTTTAATACTAATGGTACTACCTATTATGCTAATCCCTTTGCTACTGGTTTTGACTTTACCAATACAAAATTACAAGCTAATGCTCCAGAATTTGTACCCCGATTTGATAAACTTTCGTTGAACGAAACAACACAAACGGGTGATAAACAAAAAGAGAATATAGATCATAATTCGGAAACTAATGAAAACGTTAAAGTAGATTATAAAAATCAAGAAAATCAAATTAAAGAAAACGTTGAAAAAAATATGGATTCTAGTTTTGAAAAGGAAGAGAAAAGACAACAGCAAAGACATGAACGTACCCGTGGTAATAATCGCCATCATAATAAACATGATAAGGAGAATAATAGAAGAAATAATAATAGATTGGAAAAGAATATGGAAAGATTTTCTAGAAATTTACAGGAAAAACATCAAAATAATGATTCGGCATCAAATTCTAATTCTTCAACACCATCTCTAAATATGAATAATAACAATAATGGTGGTAGGGATAGAGAGCAACAACAGGGAGTAGCTAAATCTACTGGAGCTTTTAGTAAAAGTCAACGTAATGCTAATAATGATAAACAAAGAAATCAAGATAATGATAAAAATCAAACAGATAATAAACAACAATATAATAACAATAACAATAATAATAAACGTTATCAAAATGGTAGACGTTCCCAGGATTATAATGAACGAGAAGATCGTTTTGATCGTTATGTTGAGCGTGGTGAGCGTTCTGAACGCGGCCACAATCAACGTAATCAGCAACGTAATGATTATCATCAACGTTATGATAATTATCGCAGTAATAAACGTCGTGATGATTGGAATCGTAATCGTGATCGTATAAATGGTTTTCGTGTAGAGGAAAAATATTCTCATGATAATGGCAAAGACAGTCCTTTGCCTTCACCCGAAAAGAAATCTCCCAAGAAATTGTACGACAAAGAAAATGAAAAGTTATCCCAGAGAGAAAAACTCATAAGAGATATAGAAACTAGACGTCTGGAATGTTTAGTATGCGTTGAACCCATTAAAGCTCATCAGGCCGTATGGTCTTGTCATAATTGTTATCATATTTTGCATTTACAGTGTATTATAAAATGGGCTTCATCTTCGAAATCAGATGATGGCTGGCGTTGTCCAGCCTGTCAGAATGTTGAAAAAGATGTTCCACGTGATTATTATTGTTTCTGTGGTAAATTGAAAAATCCACCTAATAATCGTCAGGATATCGCTCATTCGTGTGGTGAGGTATGTGGTCGTATAGAGGGTTGCGCTCATGCTTGTACTTTACAATGTCATCCGGGTCCTTGTCCTCCTTGTCAGGCTCAAGTTAAACGTGAATGTGGCTGTGGCAAGACTTCGAAAATTATGCAATGTTGTATTAAAGAAACTATAGAATGTGATGCTACTTGTGAGAAATTATTAAATTGTGAATTACATACTTGTCAGGAAAAATGTCATGAAGGTAAATGTCCTGCTTGCAAGGAAAAAGTAGATCAAAAGTGTCATTGCTCCAAGCATGAACGACAAGTAACTTGTACTCGTGAATCCCATGATAAACATAATTATTCTTGTGGTAAACCTTGCGGCAAAGATTTAAGTTGTGGCAATCATAAGTGTAAAGATTGTTGTCACCCTAACGAATGCAGACCCTGTAAATTAAGTCCTGAAAATGTAACATCTTGTCCTTGTGGCAAAATGCCTATTGTTGCAGAGCAACGTAAATCATGTTTAGATCCTATACCAGTTTGTGAGGGTGTTTGTGGTAAGACTTTGAAATGTGGCAAAGCTACTAATCCCCATCATTGTACTTCGAAATGTCACTTGGGTAATTGTCCACCTTGCAACAAACAAACTGCTGTTAAATGCCGCTGTGGCCACATGGATCAAATGATTAAGTGCCGACAATTATCCACTCGGGCTGATGATGCCCGCTGCAAGAAACGCTGTACGAAAAAACGTTCCTGCGGCAAACATAAATGCAATCAAGAATGTTGCATAGACATTGATCATTTCTGTCCACTGCCTTGTAATTATACTTTGTCTTGTGGTAAACACAAGTGTGATCAACCTTGTCATCGCGGCAATTGTCCGCCCTGTTATCGTTCCTCTTTCGAAGAACTTTTCTGTGAATGTGGTGCTGAAGTTATCTATCCTCCTGTGCCATGTGGCACCAAGCGTCCCGTTTGCAAACGTCCCTGTTCCCGTAAGCATCCTTGCGATCATCCACCACAGCATAACTGCCATTCGGCGGCTACTTGTCCGCCTTGTATGATGTTCACCACTAAATGGTGTTTTGGTCAGCATGAACAACGTAAGACTATACCCTGTTCGCAACAAAGTTTTTCTTGTGGTTTACCTTGTAATAAACCATTGCCTTGTGGACGCCACAAGTGTATTAAGACTTGTCATGAGGGACCATGTCAAGCTCCCGGTGAAATTTGTAAACAAAGTTGTACAACACCACGTTCTACTTGTGGGCACAAGTGTATGGCTCCATGTCATAATGGTGATTGTCCAGAAAGTCCTTGCAAGGAAATGGTAAGTTTTTTGGGAACTAGTAAGTTTTTGGGAACTATTTCAGTTCCCAACTTATTGGGAACTGAACTTGATCTCAATTAG
- Protein Sequence
- MSTDSKSQSSNQPPLSQLWPGFGSTTSDLSTQLEHQHSATNPALGKHPQHQQPVNNNNNYVNFNQFIMQHNLASPHQTKPEGFARGEGQNSNYDDVFNFIHNMGNVNNNNNNNNAKGNNSGSINSNHRQHQPQQQQQHYNYFNPSLPQYQFANYNNQIVPGVSNNNNNSVFSDGLQNYNLHSNTSTSIPSSSNNQQYYDTPNSYANFNTNGTTYYANPFATGFDFTNTKLQANAPEFVPRFDKLSLNETTQTGDKQKENIDHNSETNENVKVDYKNQENQIKENVEKNMDSSFEKEEKRQQQRHERTRGNNRHHNKHDKENNRRNNNRLEKNMERFSRNLQEKHQNNDSASNSNSSTPSLNMNNNNNGGRDREQQQGVAKSTGAFSKSQRNANNDKQRNQDNDKNQTDNKQQYNNNNNNNKRYQNGRRSQDYNEREDRFDRYVERGERSERGHNQRNQQRNDYHQRYDNYRSNKRRDDWNRNRDRINGFRVEEKYSHDNGKDSPLPSPEKKSPKKLYDKENEKLSQREKLIRDIETRRLECLVCVEPIKAHQAVWSCHNCYHILHLQCIIKWASSSKSDDGWRCPACQNVEKDVPRDYYCFCGKLKNPPNNRQDIAHSCGEVCGRIEGCAHACTLQCHPGPCPPCQAQVKRECGCGKTSKIMQCCIKETIECDATCEKLLNCELHTCQEKCHEGKCPACKEKVDQKCHCSKHERQVTCTRESHDKHNYSCGKPCGKDLSCGNHKCKDCCHPNECRPCKLSPENVTSCPCGKMPIVAEQRKSCLDPIPVCEGVCGKTLKCGKATNPHHCTSKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCTKKRSCGKHKCNQECCIDIDHFCPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELFCECGAEVIYPPVPCGTKRPVCKRPCSRKHPCDHPPQHNCHSAATCPPCMMFTTKWCFGQHEQRKTIPCSQQSFSCGLPCNKPLPCGRHKCIKTCHEGPCQAPGEICKQSCTTPRSTCGHKCMAPCHNGDCPESPCKEMVSFLGTSKFLGTISVPNLLGTELDLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01194961;
- 90% Identity
- -
- 80% Identity
- -