Cruf007531.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysomya rufifacies
Gene Symbol
-
Assembly
GCA_014858695.1
Location
JACGTJ010028689.1:5965-7894[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 4.5 2.5e+02 2.4 0.2 3 15 107 119 106 122 0.82
2 8 0.026 1.4 9.5 6.2 2 23 302 324 301 324 0.96
3 8 0.00059 0.033 14.6 1.3 1 23 330 352 330 352 0.98
4 8 0.00056 0.031 14.7 4.5 2 23 359 381 358 381 0.95
5 8 0.29 16 6.2 2.8 1 15 386 400 386 410 0.86
6 8 1.6e-05 0.00087 19.6 3.8 1 23 415 437 415 437 0.97
7 8 0.00011 0.0058 17.0 2.6 1 23 443 465 443 465 0.99
8 8 2.3e-06 0.00013 22.2 5.7 1 23 471 494 471 494 0.98

Sequence Information

Coding Sequence
ATGGCTTTTGATTTGGGCATCGATAAAAATCTTTTTCTAGACACTACATGTCGTACGTGTAGTAGATTTTTTAGCGAAGATGTTAAATTCTATAAAATATTTGAGGAAAAACTTAAGACAACAACAAATGAGGGCGGTGGTGCAGTTGATGCCATTACTAGTAATAGTAGTGGTAGCAGCAGCACATTCTTACAAGCAGGTGGCGAAGTCAAGGAAATAACAGTCTATGAGACATGTGAAGAGATTAAGGAAATTTTAGAGGATTTGAATATATGGAAATTAAATATTAAACCATTTGATGGTTTGCCACAACAATTGTGTGAAGAATGTTTCCAACGTTTTAAACAGGTAAGAGCATTTCGTGAGGAATGTTTGGATAGCCAGCGTGTTTTACAGAGCTATTTTTTGGATTTTGATAATCTTTTGGAGACGGGTAAATTATCTCCGTGCAATGATGTAGAAAAAATAGATCTAGAAACTACTGATGATGCAGTTTTGGGCAAAGTATCTGCCAGATCTTCTCCGAAATGTTGTACACAAGACTTAATGTCACCTTTTAGTAGTCCTCGTTTGAGATTAAGTCCACGTTTTGCTGAATTGGGTAATTGTTTGGATACTTCTTCCTCAATGGGTACCCCTCCCCCCTTATTTGAGGAAATTAAAACAGAACCTATAGACATGGAAACTATGGAAGTGATGAAAGCAGAAAGTGAATTACCTTTTCAGGAACCAATCAAAAAAGAATATACCATAAGATCTCCAAATAATGATAGTTCAGATGAAGAATCCTCTACCCCTACCTCGGATGAGGAAGTTGAAACTGATGATTCTTCCTCTTCAGATGATGAAGCTTCTTTGCAGGATTTTAAAGTGAAACAAAAGAAAAAACTACATACATATTTGAAATGTAAAATCTGTGGTAATTCCTGTCAAAATCGCCAACAACTAAAAATGCATCATATGCGTTTTCATCCCCAAGAGAAACCATTCGAATGTGATATTTGCACCAGTACTTTTAAGTCCAGTTTCCTTTTGGCACAACACAAACTAAAGCACAATCGTCCTGATACTATGCAATGTGATGAATGCCAAAAATATTTCCGCAGCCAATTGCATTTGCAAAGACATTTCAAAAATTTCCATCTCAAATCCACTTACACTTGTCATATTTGCAATCAACAATTTGAAAATTATACACAAATGCGTTTTCAGTATCATGTCCGGCAACATGGTGAAAAACGTTTTGCCTGCTCTTACTGTGATAAGGCATTTCATCAAAAGATTCATTTAATAAATCATGAAAGGACGCATACTAAGGAGCAACCTTTTCGTTGTGATCTATGTGGCAAAGCTTATAGACAGCAAACCGCATGTCAGGAACATATGAAAACCCATAAAGATCCTACACCTTTTAAATGTAAACACTGTTCTAAGGAATTTTCTCAACGTTCAACATTACGCATGCATATGCAGAAAATGCACAATTTGGAAAAACAAACGGGCGCAGCCCAAAACTTTGGAACGAGAAATAATGCCAATACAACTGGCGTATTTGAACAGCATAATTTTATGGGGTTTTAA
Protein Sequence
MAFDLGIDKNLFLDTTCRTCSRFFSEDVKFYKIFEEKLKTTTNEGGGAVDAITSNSSGSSSTFLQAGGEVKEITVYETCEEIKEILEDLNIWKLNIKPFDGLPQQLCEECFQRFKQVRAFREECLDSQRVLQSYFLDFDNLLETGKLSPCNDVEKIDLETTDDAVLGKVSARSSPKCCTQDLMSPFSSPRLRLSPRFAELGNCLDTSSSMGTPPPLFEEIKTEPIDMETMEVMKAESELPFQEPIKKEYTIRSPNNDSSDEESSTPTSDEEVETDDSSSSDDEASLQDFKVKQKKKLHTYLKCKICGNSCQNRQQLKMHHMRFHPQEKPFECDICTSTFKSSFLLAQHKLKHNRPDTMQCDECQKYFRSQLHLQRHFKNFHLKSTYTCHICNQQFENYTQMRFQYHVRQHGEKRFACSYCDKAFHQKIHLINHERTHTKEQPFRCDLCGKAYRQQTACQEHMKTHKDPTPFKCKHCSKEFSQRSTLRMHMQKMHNLEKQTGAAQNFGTRNNANTTGVFEQHNFMGF