Cruf014088.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysomya rufifacies
Gene Symbol
-
Assembly
GCA_014858695.1
Location
JACGTJ010000573.1:39036-44260[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.32 18 6.0 1.6 3 23 248 269 246 269 0.91
2 25 8.1e-06 0.00045 20.5 3.0 1 23 275 298 275 298 0.97
3 25 0.0026 0.14 12.6 0.5 2 23 329 350 328 350 0.96
4 25 0.007 0.38 11.3 1.3 1 23 428 451 428 451 0.96
5 25 0.16 8.7 7.0 0.6 2 23 459 480 458 480 0.97
6 25 0.0036 0.2 12.2 0.7 2 23 525 546 524 546 0.96
7 25 0.012 0.68 10.5 0.2 2 20 559 577 558 580 0.93
8 25 0.00017 0.0094 16.4 1.4 1 23 661 684 661 684 0.96
9 25 0.0013 0.073 13.6 0.3 1 20 691 710 691 712 0.96
10 25 0.031 1.7 9.2 1.2 1 23 723 746 723 746 0.94
11 25 0.00033 0.018 15.5 0.4 2 23 761 782 760 782 0.97
12 25 5.5e-07 3e-05 24.2 1.8 1 23 788 810 788 810 0.98
13 25 0.02 1.1 9.9 1.8 1 23 956 980 956 980 0.97
14 25 4.4 2.4e+02 2.5 1.1 1 23 1017 1040 1017 1040 0.92
15 25 0.0038 0.21 12.1 1.9 1 23 1050 1073 1050 1073 0.94
16 25 0.015 0.84 10.2 3.7 1 23 1080 1102 1080 1103 0.93
17 25 0.0033 0.18 12.3 0.0 2 20 1129 1147 1128 1148 0.94
18 25 0.00074 0.041 14.3 5.2 1 23 1205 1228 1205 1228 0.98
19 25 2.9 1.6e+02 3.0 1.3 1 23 1265 1288 1265 1288 0.94
20 25 0.039 2.1 8.9 6.0 1 23 1321 1344 1321 1344 0.97
21 25 2.7e-06 0.00015 22.0 0.3 2 23 1374 1395 1373 1395 0.95
22 25 5.8e-06 0.00032 21.0 0.4 1 23 1401 1423 1401 1423 0.99
23 25 5.3e-07 2.9e-05 24.3 2.2 1 23 1429 1451 1429 1451 0.98
24 25 9.3e-07 5.1e-05 23.5 1.6 1 23 1457 1479 1457 1479 0.99
25 25 0.051 2.8 8.6 0.9 1 22 1485 1506 1485 1509 0.90

Sequence Information

Coding Sequence
ATGTCCGGTGATAACAAAAAAAAGGAATGTATAATAAATGGAGTACGTTATAAATGTCGAACGTGCTTTGATCCCGGGCGTACTGTCTTCTCCCTAACAGATGAAGCCAGTAACAAAAAAACTTGGAGCGATTTGTTAAAAGATATTGCAAACTTACAGACAAACAATGATAAATTACTTCCGAAAACTATGTGCTGCAAATGTTCTGATAAGCTTAAGAGTTCCTACGATTTTATAGTGCAGATACATAATGTTGATAAAAAATACTCAAAACTGTTAACAAATTGTAAGGATACTCTACAAGAAATTGATTGTTTGGCGGAAGCTGCCATAGATTTGCCATTAGAAATAAAATTGGAAGAGGAATTATTAGAGCCACCATTTACAACAGATTTAACTAGCAAAGTTGAGAGTAATAGTGAAACAAAAATGGAAAATGAAGAGGCTAATGATACTTTAATGGCAACATTAAGTGATAATTTCAATGCAACTTTAGATCAATTTGAGGAAAATGAAAGGAATCTAAGTTTAGACGATGATAATGAGGACAATGAATACAAAAATGAATCCAGTTCGGCTTCTTCCGATGAAAGCGAGGACTACGTACCACTTAAAAAATTAAAGAAAGACAAAGTTAGTAAAAGTAGCAGTAGCAGCAGCCAACCTCCAGTCAAACGTAGAAAAGGACGACAAGCTCCTGATTATTATGATAAAATTGAAAAAGTCAACAATCGTTTTGGTTGTACTATATGTCAAAAAACATTTTCATTACGTAAAGATTGTGGTCGTCATATAGCTTCAATACATTTACGTCACATTATGTTTCCTTGTGAATTTTGTGGACAATGTTTTAGTCGCAAAGACAAATTACAATTGCATATAAAACGCATGCATTCCGATGATATAGTTGTCTATCCAACTAAACATAAAGAATGGTTATTTGGAGATCGTTTATATAGCAAACCGAATGCTTGGCATTTGGTGGAATGTAAATTGTGTAATATACAATTTCCCACAACAAAAAATTTACGCATGCACTTGGAAAATCACAGTGATGTAGATACACTACACAACTTGGAATTAAGTGATAATACAATACAACATTTATTTCCTAATATGATTGATTTGGACTTTGTTAAGTCGAGTATATGCAAGGATATTGTTGAGAAACAATGGTTTAAATACTATACAGTATTGAATGAGCACTCATATGAAATGTCCATTAGTGATACAGAGGAGGAAGATATAGAGGATGATGTACCAGTTGAACGAGCTAATAAATATAAGTGTGATTTATGTAGCCAAGGATTTGCTTACAAATATCAAGTGTTTTCTCATTTAAAAGAAACTCACGGAAACGATGAAATTCCTTTGAAATGTGGTCTTTGTAAACTGGAATTCATTTCCTTAAAAATGTATGAACTACATTCGAAAACCCATTGTCGCAATAGACATAAGGTATTACTTTGCGCTCATTGTCCAGCCAAGTTTGTGTGGCCAGAAAACATGAAAAATCACAATTGTGCTACAAAAGAGTCATTAAATGCCCATGCTAATACATCATCCAAATTAATTTGCAATATTTGTGAACGTAAATTTGAAGTGAAAACTAAATATTTAAAACATCTGGAAACTCATATTGATGGGAGATTGGTGTCATCTAAAACTATAATACGTTGTGCACTTTGCCCACAGTCATTTCAAAGGCTCCAAGAATTGCGACAACATATGCCACAACATGCTGATGGAAAAACGGGAATTGACTTTACACACTGTCTTTATGTTAAGCGATTTGAACGTTCAAAATCAGCCGATTATGCTTTACTACAACAAGAGATTCAAAATGCCTACAAAAAATCACAAATTAGTCGTTTTTATCGAGCCATTGATAAATATGGCAATGAGTTGGATATTTTAGATTCGGATAGTGAGGTAGAAGAAGAGGCTGTTGGCATGGATGGAGAAAATATTAAAAGGGAATACACATGTGAACTTTGCAATGAAATGTTTAAAAAACGAAAGCTTCTTTTAAAACATCAACAGGAACTGCATAATGATGTACCTTTACCATATAAGTGTAAGGATTGTACACAACAATATGTTAGCAATGATTTGTTGCAACAACATTTGGTAAGAGATTGTTGGAATGAACACCGACGCATAGCACATCAGTGTGATTATTGTAATGCCCGTTTTATTTGGCCCAATAATCTGTTCAAACATAAAGAAATACAGCATAAACATCAAAAACAACCCAAACCCCAAAGGGCAAATACACTAAAGTGTGAGTATTGCGAAAAGGTTTTCATATGGCCCAAAGATTTGGTGCGTCACAGAAAAACCCACACTGAAGGGAAAAAATTCAATTGTCCTCATTGTGATCGTAAATTTCAACGAAAAGACAATTTACTGGCCCACATACGTATACATTGTCCCGATGGTATACCGACAATTCCCAATCCCGGCAAAGGTCTCAGCTATATATTGCCACATTTATTAAAACCCCATGGTTGCAAACGTATAATGTGTATGATTTGTTTTTCCGAACATAATCGTATACGCGATCTAAGATCTCACCTAAGAACTCATCGATATTCTGTCAATTTCGAAAAGCGAAAAGAAAAGGAAACATATGAATCCATTTCAACTCAATTGTATCCCGATGAAACGGTACCACTAACTGAAGAAGAAATTATAAAACGTATTAGTGCTGATATCGCCTCTGAAAATAATTTAGAACGTTTTTATTCCATAACAAGTGAAAATGGTAACGAAGTCAGTCTAGATAGCTCAGAAACGGAAAGTGATTCTGATAATGAAGATGTGGGCGATGAAGAAGATAAAGAGTATAGGCCTAAACGCGAATATAAATGTGATTTATGTCCTCAATTGAGTTTCGATCGAAAATACAAGTTATTCGATCATCAAAATAGGCAACATAAATGGGAAGAAGCCCGTCATATGTGTATACACTGCAATGGACGTTTTCTATCGTCATATATGCTGCAATTACATTACAAAAATCAATGCAAGAATAGTAAAAAACGTCATTTTTGTCGTCGTTGTCCGATGCGTTTTATGTGGAAAGAAAATATGAAGGTACACATTGTAATGGAGCATGGTCAAGAGATGGATTCAAATCGTCGCCATGAATGTTTCCTCTGTAAAGAGAAATTCTCCGCTCAAAAAGATCTTAAACGTCACCTTGCTAATGATCATTCGGCCGATGCTGCACTCCATTATTGCCTTCTTTGTCCAAAAACATTCTATAGCATTGAACATCTTAATGAGCATTTGGATGGTCATCATTTAACTACAGCGGATGTCACAACAATTGAAAGTATTATACATTCCACATGTTGGCCAAACGGAGAAAAGATTATTAAATGTAAAATTTGTGGACTGATATTTGATAATATGGCCAATTTAAGAGAACATTATTCACCTAGAAATCCTCGAAACTTATGTGCCAATCAACATTCTCTGGCGAATTATTCAATAACAAATCAAAAAGGCTTTGAATTGCATTTGGAGTTGGATTCGGAAACAGAAGCTGAAGAAGAAGTGGAAGTAGGAAATAATAAAGCCAACAGTAAAAGACCTTTATATCCTTACAACTGTTGCATGTGCAGCATGTCGTTTAAGCGAAAATATCAAATGGCACAACATCAACGAACCATGCACAATTATGAAGAGCTAGCATTAAAATGTGAGCGATGTATTTTTAGGACAATTTCACAGAAAGTTTTAGACTATCACAAAATCACGCAGTGTTTTAATGCAGAAAAACAATTTGAATGTATACATTGCAATTTTAAATTTATGTGGCAGGAAAATCTCGATAACCATATAGCCACATTTCATGATCCCAAAGATATACCTAAGGCAACGGATGAGATCGCTAAATTATCTACAGCTATTGAGCCTATTCCGGCAAGCACTAAAACCGAAACCACTATATTTGAGTGTATGGACTGCCATCGTCGCTACAATCGCAGGGATCGTTATAAAGCGCATTTTAGAAAATTCCACAGCAATGATTCAGATTTAAGAACTGATGCAAAGGTTTTTGCTATAAGACCTCGCAAACAACCCACCAAAAAGTTGGACAAGAAATTTTTATGTGCTTTTTGTGGCCTAGCTTTCGCAAACAATTCCAATCTAACTGTTCATATGAGAAGACATACGGGTGAAAAACCTTTTAAGTGTGATCTTTGTGAAATGGCTTTTCCGCGTACATCCGATTTACAGGCTCATCGAAGAACACATACTGGTGAACGTCCCTTTCAGTGTGAGTACTGTGATAAATCATTTTCACGTCAGTACAAACTTAATGTCCACAATCGTATACACACCGGTGAGCGTCCTTATCAGTGTACATATTGTGAGAAATCATTTATTCAATCGAATGATCTAACTTTACATTTGCGTCGTCATACAGGTGAGAGGCCTTATACATGTGACGTTTGCGGGGAAGGTTTCATATGTGCCACATCACTGAAGCAACATCGAACTTCCAGAGGTCATCAAGAGGATAAAATGGATTTGAAAATGTGTGTTCAACAAATGTCACAATTCGATATGAAATTTTAA
Protein Sequence
MSGDNKKKECIINGVRYKCRTCFDPGRTVFSLTDEASNKKTWSDLLKDIANLQTNNDKLLPKTMCCKCSDKLKSSYDFIVQIHNVDKKYSKLLTNCKDTLQEIDCLAEAAIDLPLEIKLEEELLEPPFTTDLTSKVESNSETKMENEEANDTLMATLSDNFNATLDQFEENERNLSLDDDNEDNEYKNESSSASSDESEDYVPLKKLKKDKVSKSSSSSSQPPVKRRKGRQAPDYYDKIEKVNNRFGCTICQKTFSLRKDCGRHIASIHLRHIMFPCEFCGQCFSRKDKLQLHIKRMHSDDIVVYPTKHKEWLFGDRLYSKPNAWHLVECKLCNIQFPTTKNLRMHLENHSDVDTLHNLELSDNTIQHLFPNMIDLDFVKSSICKDIVEKQWFKYYTVLNEHSYEMSISDTEEEDIEDDVPVERANKYKCDLCSQGFAYKYQVFSHLKETHGNDEIPLKCGLCKLEFISLKMYELHSKTHCRNRHKVLLCAHCPAKFVWPENMKNHNCATKESLNAHANTSSKLICNICERKFEVKTKYLKHLETHIDGRLVSSKTIIRCALCPQSFQRLQELRQHMPQHADGKTGIDFTHCLYVKRFERSKSADYALLQQEIQNAYKKSQISRFYRAIDKYGNELDILDSDSEVEEEAVGMDGENIKREYTCELCNEMFKKRKLLLKHQQELHNDVPLPYKCKDCTQQYVSNDLLQQHLVRDCWNEHRRIAHQCDYCNARFIWPNNLFKHKEIQHKHQKQPKPQRANTLKCEYCEKVFIWPKDLVRHRKTHTEGKKFNCPHCDRKFQRKDNLLAHIRIHCPDGIPTIPNPGKGLSYILPHLLKPHGCKRIMCMICFSEHNRIRDLRSHLRTHRYSVNFEKRKEKETYESISTQLYPDETVPLTEEEIIKRISADIASENNLERFYSITSENGNEVSLDSSETESDSDNEDVGDEEDKEYRPKREYKCDLCPQLSFDRKYKLFDHQNRQHKWEEARHMCIHCNGRFLSSYMLQLHYKNQCKNSKKRHFCRRCPMRFMWKENMKVHIVMEHGQEMDSNRRHECFLCKEKFSAQKDLKRHLANDHSADAALHYCLLCPKTFYSIEHLNEHLDGHHLTTADVTTIESIIHSTCWPNGEKIIKCKICGLIFDNMANLREHYSPRNPRNLCANQHSLANYSITNQKGFELHLELDSETEAEEEVEVGNNKANSKRPLYPYNCCMCSMSFKRKYQMAQHQRTMHNYEELALKCERCIFRTISQKVLDYHKITQCFNAEKQFECIHCNFKFMWQENLDNHIATFHDPKDIPKATDEIAKLSTAIEPIPASTKTETTIFECMDCHRRYNRRDRYKAHFRKFHSNDSDLRTDAKVFAIRPRKQPTKKLDKKFLCAFCGLAFANNSNLTVHMRRHTGEKPFKCDLCEMAFPRTSDLQAHRRTHTGERPFQCEYCDKSFSRQYKLNVHNRIHTGERPYQCTYCEKSFIQSNDLTLHLRRHTGERPYTCDVCGEGFICATSLKQHRTSRGHQEDKMDLKMCVQQMSQFDMKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01259362;
90% Identity
-
80% Identity
-