Caen020337.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- nfxl1
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000017.1:505411-511972[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 5.2e+04 -7.8 5.6 15 19 161 165 160 165 0.81 2 19 0.13 3.4e+03 -0.3 0.4 4 10 196 202 195 202 0.95 3 19 1.7e-07 0.0043 18.5 16.0 1 19 210 227 210 227 0.99 4 19 2.6e-06 0.067 14.7 14.2 1 19 263 281 257 281 0.87 5 19 1.2e-09 3.1e-05 25.4 8.2 1 19 316 334 316 334 0.97 6 19 0.92 2.4e+04 -3.0 0.7 6 10 359 363 358 363 0.88 7 19 1.1e-05 0.29 12.7 12.4 1 18 369 386 369 387 0.97 8 19 1 2.7e+04 -3.2 0.2 1 4 396 399 396 400 0.87 9 19 5.5e-05 1.4 10.5 17.1 1 18 421 438 421 439 0.94 10 19 5.9e-10 1.5e-05 26.3 10.6 1 18 448 465 448 466 0.97 11 19 0.69 1.8e+04 -2.6 1.1 5 10 494 499 494 499 0.94 12 19 0.00012 3.2 9.3 5.6 10 19 515 524 512 524 0.89 13 19 0.0036 94 4.7 6.8 3 12 535 544 534 544 0.91 14 19 2 5.2e+04 -6.9 4.5 14 18 572 576 572 576 0.86 15 19 2 5.2e+04 -4.4 1.4 6 10 603 607 602 607 0.58 16 19 8.8e-05 2.3 9.8 3.2 1 11 613 623 613 627 0.95 17 19 5.2e-06 0.14 13.7 16.8 3 19 654 670 653 670 0.94 18 19 1.1e-06 0.03 15.8 10.4 1 16 713 727 713 733 0.93 19 19 0.95 2.5e+04 -3.1 0.9 6 10 763 767 762 767 0.89
Sequence Information
- Coding Sequence
- atgtatAATCAATCTAAAACAAAAAATCCATGGAATAAAAATGTACAGCCTAAAAAGAATTCACAGAATAATAAACTATCACCGTCTTCTTCCGAAGCCAAATTCAAGGAAGCTCACTCAAAATTACAAGCAGCTGTTAAGAAACATGTGAAAGAATACGAATCGTCTTCAGATGAGGAGCAACTGGAATCTAGTACTTTGATAGATGCTATTCTGAAGGACTATCAATACACAGGTGGTGTGAGTGAACAGCTTGGCAAAACAAGATCATTTTTGGAAGAAACTTTTCAGTCAGGTGCTTCCACATGTTTAATTTGTATATCCAGAGTTAAACGAGATGATGAGATATGGAGTTGTTCAAGCTGTTTTGGATTCTTCCACTTGATGTGCATTCAAAGGTGGTCAAAGGATACTCTAACTCAACAAAAACTAGCTCTAGAAGGACAAATACAATCTCAAAAAGCAAAATTATGTTGGTGTTGCCCCAAATGCCGGTTTGAATATTCAACTGAAGAAGTTCCTACAAAATATTTAtgtttttgcaaaaaaactgagAAACCAAAGTTTCATCCTTTTTTAGTACCACACTCATGCGGAGAAATTTGTAAAAAGAACCTCATTTCCAGTTGTGGACACAGTTGTTTGCTTCTTTGTCATCCAGGACAATGTCCTCCCTGTCCTGTCACTGTTAGTGTTTCTTGCTACTGTGGCTCTCAACCCCCAACGATTCAGCGGTGTAGCAACAAAGAATGGTCTTGTAATGGAATTTGCGGAAAGATTTTGGAATGTCAGAAACATACCTGTGCAGATCCATGTCATTTTGGAAAATGCAAACCCTGTCCCAAAAAGAGTGTACAAAAGTGTGTATGTAAATCACAACAAAAACTGCGAGATTGTGCTAACCCAGTATGGCAGTGTGATAAGATCTGCAACAAACCATTGGAATGTGGATATCATAAATGTGAGGAAGTCTGTCATGATGGTGTTTGTGATATGTGTTCTTTGACAAAAGTGAGAACTTGTCCATGTGGAAAATCTACTTATCGTCTCCCTTGTACAGAAGAAACACCACATTGCCAAGATACATGCGAAAAAGTTCTTGATTGTGGCGTGCACAGATGCAATGAAAGATGTCACAAAGAAAAATGTGGCCAGTGTCTTGAAACTGTTGAGAAACTTTGTCGATGTGGTCTGCATTCCAAAGAAGTACAGTGTTTCAAACCCTACATCTGTGAGGTTAAATGTAAAAGAATGAAAGATTGTAACAAGCACCCTTGCAATCGAAAGTGTTGTGATGGGAACTGCCCACCATGCGAGAAGTCTTGTGGTCGTACCCTGAACTGCAGCAATCACAAATGCATTTCAGTATGTCACCGAGGACCGTGTTATCCTTGCAACCTAACTGATGAAGTATCTTGTAGATGTGGCGCAACAAAGATTGCAGTGCCGTGTGGACGAAAAAATAAGACTAAACCACCAAAATGCAGCAAACTATGTTTaatTGCACCGGATTGTCACCATGAAAAAAGAGAAAATCATAGATGTCATTTTGGAGACTGTCCCCCATGCAGGCAAGTTTGCAATAAAGACCGAACCACTTGCCAACACGCATGTCAATCTCCATGCCATTCAGCAGTTCTCGTCAAAATAGAAGGACAAAAAGCTTCAATGCCTTGGGAACAAACCAAGCCACAGATCGAAAGGAAAGCACTACCTTGTCCTGATTGTGTTGTATTAGTTCCAGTAACATGTCTAGGAGAACATGAAACTGCTGATTGGCCTTGTTATTTAGCAAAACCATCTAGTTGTCATCGCCCATGTGGAAGAATTCTTGAATGCAGTAACCACAGCTGCAGTTTACCTTGTCATGTCGTTGAAGGAGCACTTGACAAATTCAAGTCTGGTGATAATTGTGAAGGTTGTGAAGGCAGCTGCACCAAAGAAAGACCAGAAGGCTGTCAGCACTCTTGTCCAAAACCATGTCATTCAGGAATGTGTCCTCCATGCAAAAATATGATACGCATTAAATGTTTTTGTGGTCTCAATCAGTTATATGTTACTTGCTCAGACTGGCTTcatgaagaaaagaaaatagAAATACAAAGCTGCAAAAATCAGTGTCCAAAGAATTATGAATGTGGACACAGATGTAAAGCAAATTGTCACCCAGGAGAATGCCCAAATGCGTATTTGTGCAAGAAAAAAGTTAAAATTACATGTAAGTGCAAGCGAATTCGTAAAGAATTTTCTTGTGAATCCATCAGAAAACAATTGGCAGTCATAGAATGTGATGAAGTTTGCCtcaagaaaaaagaagaagaccgTAAATCAAGAGAAGCAGCTGAGGAAGTGAAGAAGCTGGAAGAGGAACTGAAGAATAGAAAAGAACTTGAAAAGTATCAAAAGCTGTTTGAAGGAAAGAAAAAACATAGGGATCGGAGATATTTTGaagatgatgaaaaaattggTTTTGTCAAGAAATACTGGATAATGATTTGCTCAATATCAGTTATATTCTTATCATCGGGAgcttattatttattgaatatgtga
- Protein Sequence
- MYNQSKTKNPWNKNVQPKKNSQNNKLSPSSSEAKFKEAHSKLQAAVKKHVKEYESSSDEEQLESSTLIDAILKDYQYTGGVSEQLGKTRSFLEETFQSGASTCLICISRVKRDDEIWSCSSCFGFFHLMCIQRWSKDTLTQQKLALEGQIQSQKAKLCWCCPKCRFEYSTEEVPTKYLCFCKKTEKPKFHPFLVPHSCGEICKKNLISSCGHSCLLLCHPGQCPPCPVTVSVSCYCGSQPPTIQRCSNKEWSCNGICGKILECQKHTCADPCHFGKCKPCPKKSVQKCVCKSQQKLRDCANPVWQCDKICNKPLECGYHKCEEVCHDGVCDMCSLTKVRTCPCGKSTYRLPCTEETPHCQDTCEKVLDCGVHRCNERCHKEKCGQCLETVEKLCRCGLHSKEVQCFKPYICEVKCKRMKDCNKHPCNRKCCDGNCPPCEKSCGRTLNCSNHKCISVCHRGPCYPCNLTDEVSCRCGATKIAVPCGRKNKTKPPKCSKLCLIAPDCHHEKRENHRCHFGDCPPCRQVCNKDRTTCQHACQSPCHSAVLVKIEGQKASMPWEQTKPQIERKALPCPDCVVLVPVTCLGEHETADWPCYLAKPSSCHRPCGRILECSNHSCSLPCHVVEGALDKFKSGDNCEGCEGSCTKERPEGCQHSCPKPCHSGMCPPCKNMIRIKCFCGLNQLYVTCSDWLHEEKKIEIQSCKNQCPKNYECGHRCKANCHPGECPNAYLCKKKVKITCKCKRIRKEFSCESIRKQLAVIECDEVCLKKKEEDRKSREAAEEVKKLEEELKNRKELEKYQKLFEGKKKHRDRRYFEDDEKIGFVKKYWIMICSISVIFLSSGAYYLLNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00740488;
- 90% Identity
- -
- 80% Identity
- -