Caen011833.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000008.1:7612499-7613749[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0064 83 4.9 0.1 20 45 45 70 38 73 0.82 2 9 0.0051 66 5.2 0.1 21 47 104 130 97 135 0.88 3 9 0.0015 20 6.9 0.0 21 46 132 157 130 162 0.91 4 9 0.21 2.7e+03 0.0 0.1 26 45 165 184 158 190 0.79 5 9 0.00084 11 7.7 0.2 19 52 186 219 178 221 0.80 6 9 0.098 1.3e+03 1.1 0.1 21 43 216 238 214 247 0.76 7 9 9e-05 1.2 10.8 0.1 20 46 243 269 235 274 0.86 8 9 0.028 3.7e+02 2.8 0.1 21 45 272 296 268 299 0.88 9 9 4.5e-05 0.59 11.8 0.1 21 52 300 331 295 333 0.94
Sequence Information
- Coding Sequence
- ATGCAGAATAAACATAAAGACAATGCAAACAAATGGGTAATTGAGCACAGAGATCAAAGACTCTTCCAGTGTGAAATTTGCCTAAATGAATATTCTTCCAAATACAGACTACAAGAACACATTCGTTCACACACTGGTGAAAAACCATTCCAATGTGAAATTTGTCAGAAATGTTTCGTCTCTAATGGCAATCTTTACAAACACATACGCATACACACTGGCGACGATTTGAAACTATTCCATTGTGACGTTTGTCAGAAGGAATTCAGTTCCAACAGTAACCTAAATCAACATATGCGTGTGCACACCGGTGAGAAACCATTTCAATGTGACATTTGCCAAGATAAGTTCAGCCAGAGGAGTCACCTCAATCAACATGTCAAACTGCATTCTAGTAAAAATCCATTCGAATGTGACATTTGTCACAAGAACTTCACCGCCAGTAGTAGTCTCAATCGACACATGAATGTGCACAAAGATGAGACACGATTCCAGTGTGATATCTGCGAGGAAAAATTCGCCAGGAAGAGATCTCTGGAAAAACATGTCAGGTCGCACTATAGTAAAGTTCCGGTACAATGTGACGTTTGTTTGAAACACTTCCTCAATCAAAGCAACTTACGTAAACATAAACGTCTGCACACTGGTGAGAAACCATTTCAGTGTGATATTTGCCATAAAAAACTCTGCTCCAGTGTTATCCTGGATGAACATAGACGTGTGCATACTGGGGAAAAACCATTCGAATGTGATATTTGCCAGATGAAATTCAGACAAAAGAGCTCACTCAACCGACACGTTAGGGTACATACTAGTAAGACACCTTTCGAATGTGATATTTGTCAGAAAAACTTCGTATCCAATATTAATCTGACGCGACACCAGAATGTACACACTGGTGAGAAACCATTCCATTGCAACATTTGTCCAAATAAATTCGCACAGAAAGTTGGTTTGAAGAGACACCTGATCATGGTGCACAATAAGAAACCTTCACGGGAAGATCAATGTCTAGACAACATTACTGATGCCAATAATAGTCCTGTTCTCAAAGAAGAAAGGAAAATACTGTATCATGCTATGGGAGAAGAGGTGGAGGTAAAAAAAGAAGATATCTGCTCATCGCCGAATATTAAAGTTGAAGATCCATCGGAGCTTGTAGAATATGAGCTCAATTCCGAGCACCATGAGTTGCAATGCTATGATGGAAATCAATTCGATGTGATTAAAAAAGAGGAAATCAAGGAATAA
- Protein Sequence
- MQNKHKDNANKWVIEHRDQRLFQCEICLNEYSSKYRLQEHIRSHTGEKPFQCEICQKCFVSNGNLYKHIRIHTGDDLKLFHCDVCQKEFSSNSNLNQHMRVHTGEKPFQCDICQDKFSQRSHLNQHVKLHSSKNPFECDICHKNFTASSSLNRHMNVHKDETRFQCDICEEKFARKRSLEKHVRSHYSKVPVQCDVCLKHFLNQSNLRKHKRLHTGEKPFQCDICHKKLCSSVILDEHRRVHTGEKPFECDICQMKFRQKSSLNRHVRVHTSKTPFECDICQKNFVSNINLTRHQNVHTGEKPFHCNICPNKFAQKVGLKRHLIMVHNKKPSREDQCLDNITDANNSPVLKEERKILYHAMGEEVEVKKEDICSSPNIKVEDPSELVEYELNSEHHELQCYDGNQFDVIKKEEIKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00330914;
- 90% Identity
- iTF_00330914;
- 80% Identity
- iTF_00330914;