Caen013690.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- topi
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000009.1:15334105-15340613[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0042 0.64 12.1 2.0 2 21 97 116 96 117 0.94 2 13 4.2e-06 0.00064 21.5 0.6 1 23 146 168 146 168 0.97 3 13 0.012 1.8 10.6 4.4 2 23 175 196 175 196 0.95 4 13 0.029 4.5 9.4 0.3 2 20 215 233 214 235 0.86 5 13 0.00054 0.082 14.9 1.1 2 23 282 303 281 303 0.97 6 13 0.0099 1.5 10.9 4.0 3 22 347 366 345 369 0.89 7 13 0.005 0.75 11.8 0.2 1 23 495 518 495 518 0.97 8 13 0.0039 0.59 12.2 0.0 1 23 522 544 522 544 0.97 9 13 8.9e-07 0.00014 23.6 2.4 1 23 550 572 550 572 0.98 10 13 0.026 3.9 9.6 0.2 1 23 578 603 578 603 0.96 11 13 0.088 13 7.9 2.9 1 23 609 631 609 631 0.86 12 13 5.5e-06 0.00084 21.1 0.3 1 23 637 659 637 659 0.98 13 13 1.9e-06 0.00029 22.6 1.9 1 23 665 688 665 688 0.98
Sequence Information
- Coding Sequence
- ATGAACAGCAGTCTTGATAAACTTGTTATAAATGTCCATAGAATATCAGAAAATGAAGCAGTGCTCTGGTCACTAAAATTTGAAATGGACCCACATACAACAGAATCACTGTCTAGGACATACTTCACATCAGCGAATGTAATTTTTAATTGTTCTCGTGAAAACAAATTGACCCTCAACCACGAGAGATTCAAAATACACGAGAATATTAACTGTGTTAAAGTAGAAAACTTTGAAGATTTTGGACTAACTATTGGAAAACCTATGTTGAATATCCCCACTATGATAAGATGCCAGAATTGTGAGACTAATTTTCCAACAAGGTACCAATATCAAAGACATCAATGTGAATTTAATGCTGAAAAAGTGGTTCTAAAACCTGAAACAGACTGCATCAGCAATTTTGAAACTATTGACACTAATAAAGGTGATAGATACATTTGTGAGCTGTGTGATAAACAATTCATGAATAAGAATAATTTGGAACGCCATCAGGCAAGTCATGAGATCATACAAAGAAATACATGTGAGCATTGTGATAAACATTTTGTTACTGAGAATAGATTACGAATACATAAAGAAAATCACTGCAAAAAGGCAGGtgatgtttcaaaattttataGAAGCGACGTAGCTGTTTGGAAGTGTAAAAAATGCCATGAAGTGTTTTCTTCACCATTGTCCGCAAAGTATCATGTCTCAGTATGCATGGAGTTCATTGAATATAAACCTGCTGAACAGACGAGTGAAACGTGTTCAATTATATCtggaaatgaaaaagaaaatatacCCTTAGATGCTGAAGATGATACTATTGAAAAGGTTCAAACTGAAATATTATTACAATGTGAATTTTGTAATAGAACCTATGCCGAAAAAAATCTACTTCTGATGCATCAAAGAAAGCATACTACTTCCAAAAATTATGAATGTGTGAATTGTTTTCAAGTATTCGATTCATATATCATAGCTGCACAACATTGGACAAACAAATGTACTGAATACGTGAGCCTGTTTTATTTGCCAAAATTTACTTTCTGTGAATACTGTAACAGAACTTTCAAGTCACATGAATTACTTTATACAcataaaataaagaaaaaacactACACTTCGAAATTTCATGAATCAAACTTATGCGATAAAGAAACCAATGTTGATGCTGCTGTTAATCAAAAATCCGTGGACAACaaagaaattttgaataaactcATCGAAGATGTCTTGAAAACGCTCGATGTTCCCGTTACGAAATTGTCATCGAATGCTTATATACCTAACGTTCAAACGATAACTAACAATAGTAACAATAATCAGCCAATGATCGATATTGCTAAAATTAAAATGGAAAATGAGGAATGTGAAAGTAATCACAGCTTTGACCTGACAGAAAAACGGAGACGCGGTAGGAAAAGAAAATATACCAAGAGCCAAATACCGAAAATACGGAAACTCAACTGCGAGATAGAAGCGGGTTTCAGATATCAGTGTGAACGTTGTGTCAATGTATTCGAAAACATTGTTAATCTAGAGAAACACCGAGAGAAAGAACATGCAGCTAATTTCACATGTGAGGACTGTGGGCAGGTTCTTCAGAGTGCCAAAGCATTATTGATCCATAGTCGTGCACACAAATGTCTGAAACCGTATGTGTGCGAAACATGTGGAAGAAGTTATTCTCAGACTTCACATCTTTGGCAACACATGAGATTCCATCAAGGCATAAAACCATTTGCTTGCCCCCACGAAGGCTGCGAGGCAAGATACACCATCAGACCTGACTTGAAAGATCACATAAGAAAAGTGCATACTCGAGAGAGGCCTTTCAAGTGTAACGTTTGCGACAAATGCTTCTTGACTGGGTCTGTTTATTACCAACACCGATTGATACACACCAATGATCGAAGATATGCTTGTGATCTATGCCCCAAGAGGTTCTTTCGTGCCGATGCTCTAAACAACCACCGCAGAATTCACACAGATGAGCGCCCTTATCCATGTCATGTCTGTGGAAGAGAATTTAGGCAAAAGGGTGATAGGAATAAACATATCAGAACACAGCATCCTGATGCCATTCAAATGATATAA
- Protein Sequence
- MNSSLDKLVINVHRISENEAVLWSLKFEMDPHTTESLSRTYFTSANVIFNCSRENKLTLNHERFKIHENINCVKVENFEDFGLTIGKPMLNIPTMIRCQNCETNFPTRYQYQRHQCEFNAEKVVLKPETDCISNFETIDTNKGDRYICELCDKQFMNKNNLERHQASHEIIQRNTCEHCDKHFVTENRLRIHKENHCKKAGDVSKFYRSDVAVWKCKKCHEVFSSPLSAKYHVSVCMEFIEYKPAEQTSETCSIISGNEKENIPLDAEDDTIEKVQTEILLQCEFCNRTYAEKNLLLMHQRKHTTSKNYECVNCFQVFDSYIIAAQHWTNKCTEYVSLFYLPKFTFCEYCNRTFKSHELLYTHKIKKKHYTSKFHESNLCDKETNVDAAVNQKSVDNKEILNKLIEDVLKTLDVPVTKLSSNAYIPNVQTITNNSNNNQPMIDIAKIKMENEECESNHSFDLTEKRRRGRKRKYTKSQIPKIRKLNCEIEAGFRYQCERCVNVFENIVNLEKHREKEHAANFTCEDCGQVLQSAKALLIHSRAHKCLKPYVCETCGRSYSQTSHLWQHMRFHQGIKPFACPHEGCEARYTIRPDLKDHIRKVHTRERPFKCNVCDKCFLTGSVYYQHRLIHTNDRRYACDLCPKRFFRADALNNHRRIHTDERPYPCHVCGREFRQKGDRNKHIRTQHPDAIQMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00740248;
- 90% Identity
- -
- 80% Identity
- -