Caen016822.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- Hr39
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000012.1:3064198-3083916[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3e-08 0.00053 21.0 0.0 1 22 140 161 140 169 0.89 2 3 0.031 5.4e+02 1.2 0.0 81 120 193 229 166 255 0.76 3 3 2.2e-73 3.9e-69 235.6 0.2 205 408 269 467 250 467 0.97
Sequence Information
- Coding Sequence
- ATGGTTTTTGCTATGGGTCGACACGTGCACAGCCTTCACAACAGCCCTCTACACCACCCGAGCCTCCTTTACCGGAACGTGCAAGACGAGAATCTGCATTATCCCCCCGAGCAGGACCCCAACGATGAGCACGAGGACAAGACCGGCCTCATCCACTCGTCTCTGCCGGCCCAGCCTGGCATTTCCCGCCAACAGTTGATCAACAGTCCTTGTCCCATCTGCGGCGACAAAATATCCGGCTTCCACTACGGAATCTTCAGCTGCGAGTCATGCAAGGGTTTCTTCAAGAGGACGGTCCAGAACAGGAAGAATTATGTGTGCCTGAGGGGTGCCCAGTGTCCCGTCACGGTATCCACGAGGAAGAAGTGTCCTGCTTGTCGGTTCGATAAGTGTCTACAGTGTGGGATGAAATTAGAAGCGATAAGGGAGGACAGGACCAGGGGCGGCCGCTCGACGTACCAGTGCTCGTACTCGCTGCCGCCCTCGCTGGCGAACCACCCGGAGATGCGGATCGAGCCGCGGTACGGCCCTGGAGACACCCATCCGGGGCTGACGGTGAAGCTGGAGCCGGCGGAGCCCGGCCTGTCGCACCACGGCAGGCGCACCGCGCATCCCGGCTCCAAGGGTGTCCCGCCGTTATTGAGAGAAATAATGGATGTGGAGCACCTGTGGCACTACAGCGAGATGGAGCTACACAAACTCAGCACGGAAGGGCATTTGGGCAAAGAGGGGTCCAGCGGGGCTGTGCACAACCTTTCCACCCACCCTCTGCTAGCCGGGACAGCTCTGGCTGGATCCACGGACACCAATCCGGATTTCGTGGCTAACCTCTGCAATATTGCCGACCACAGATTGTACAAAATCGTCAAGTGGTGCAAGAGTCTTCCGTTGTTCAAGAATATTTCGATCGATGACCAGATCTGCCTCCTCATCAACTCTTGGTGCGAGCTCCTCCTGTTCTCTTGCTGCTTCCGATCGATGACCACGCCTGGGGAGATAAGAGTGTCTCTGGGCAAGAGCATCAATCTGCAGCAGGCGAGAGACATGGGGATGCAGCCGTGCATAGAGAGAATGCTGAATTTCACCGAGCAGCTGCGGAGGCTGCGAGTGGACCAGTACGAATACATCGCCATGAAAGTGATCGTTCTTCTCACGTCCGACACGTCAGAACTCAAAGAAGCCGAAAAGGTGAGGATGTCGCAGGAGAAAGCTCTGAAAGCTTTGCAGGATTACACCTTGTCGCATTATCCTGAGAGTCCCTCTAAATTCGGGGAACTGCTCCTACGGATTCCTGAGCTGCAGAGAACTTGTCAGGTGGGCAAAGAGATGTTGACGATCAAATCGAAAGACGGAGACGGACCTAGCTTCAACCTCCTCATGGAACTGTTGAGGGGGGACCACTGA
- Protein Sequence
- MVFAMGRHVHSLHNSPLHHPSLLYRNVQDENLHYPPEQDPNDEHEDKTGLIHSSLPAQPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAQCPVTVSTRKKCPACRFDKCLQCGMKLEAIREDRTRGGRSTYQCSYSLPPSLANHPEMRIEPRYGPGDTHPGLTVKLEPAEPGLSHHGRRTAHPGSKGVPPLLREIMDVEHLWHYSEMELHKLSTEGHLGKEGSSGAVHNLSTHPLLAGTALAGSTDTNPDFVANLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMTTPGEIRVSLGKSINLQQARDMGMQPCIERMLNFTEQLRRLRVDQYEYIAMKVIVLLTSDTSELKEAEKVRMSQEKALKALQDYTLSHYPESPSKFGELLLRIPELQRTCQVGKEMLTIKSKDGDGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01296227;
- 90% Identity
- iTF_00740012;
- 80% Identity
- iTF_00330630;