Caen024127.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000021.1:9003950-9005635[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.3e-09 4.6e-06 27.7 0.0 5 35 22 51 21 59 0.89
Sequence Information
- Coding Sequence
- ATGCCccgaaaatatataaaaaaactggGCCCCACAAGGAAACAAGTGTACAACCCAGTCTATTTGCGAAGGGCTGTCGATGCGGTTAAACGAGGGATGGCTATAAGAAGGGCAGCTGAAAATTTTGGAGTACCATATAGCACGGTGTACGATAATGTCCGTACACCTGCAGAAAGAAAAATTGGAGGTCAACCGGCTCTCTCTGCTATTGAAGAACGGAAGCTAGCAGACGCTCTTCTCCTGTGTGCTGACTGGGGATTCCCATTCAAGAGCTATGATGTTAGGTACATGGTACAACAATACTTAACTAAGGCTGGAAGAACCGAGAAACGCTTTGAGAATAATTTTCCAGGAGTCGACTGGTTCAAATCATTTATGGGCAGACACGAGGATTTGACCATAAAGTTAGCAGAAAACACAAAGAGGGTCAGAGCAGCGGTAACATATGAGGTAGTTCAAAAGTATTTTTCCGAATTGGCCACCACCATCGATGGCGTTCCTCCCGCTAATATTATAAACTACGACGAGACAAACTTTTCTGATGATCCAGGCCAAGCTTTGGTCGTTGTCAGAAAAGGCAAAAAACATGCCCACAGAGTTATTGATGTCTCTAAGTCAAGCACGAGCGTAATGTTCGCGGTGGCAGGGGATGGAAAATTATTACCGCCCTATATTGTATACAAAGCCAAACACATGTATGAAGGCTGGACGGAGGGCGGCTTCCCAAAAGCCCGGTATAATAGAACCACAAGCGGCTGGTTTGATGCCGAAACATTTGAGGATTGGTTCATGTCCATTGCGCTTCCATATTTTAACTCACTGGAAGGAAATAAAGTTATGTTAGGTGATAATCTCTGCAGCCATTTAACAGTCAGCGTTGTAGAGGCCTGCGAGAATAATGACATTAAATTTGTTCTGCTTCCTCCCAATTCAACCGACTTACTACAGCCTCTTGATGTTGCCTACTTTCGCCCCCTCAAATATGCGTGGAAAAAGACCTTAGAAGAGTGGAAGCTCAAAAATAGGGGAGTCCTGCCAAAAACCATCTTTCCCAGACTTTTAAATGCAACTATTGATAAAGTCGGTTTCAGAAGTGGGGAAAACACGAAAGCAGGCTTCAAGGCATGTGGGATAGTCCCCTTCAATCCAGACCAAACCCTGAAAAAAATTAGACATTTGAAAAATACAGAAAATGCTGAGAATGATAATGAGGTAGAGCAAACATGGAGTGACACAATTGTTTCTCACTTAAGAGAATTAAGAACAGGAGGAGAAAGCGCTCCAAAACGAGGAAAACGGGTGAGTGTGGAGGCTGGGAAAAGTGTTTCTGTTGGGGACCTAATAAATACTCTTGTGGAGACACAACCTCCAGAGCAGGAGGAAAGCATGGTTGAGGACCAATCCCCTGGAATGTCCCAAGATTTATCAGATCTGTCTGACGTAGAGGAGGACCAGAATAATGTCGATTTAAACAGGgaggaaaataatgaaaaccaaaTTTTTGGCCTTGGAGACTTTGTAATAGTGAAGTTTGCCACCAATAAGCGAGACAGATTTTTCATTGCTAAAATTGAGCAAATTAATGAGACGGGCCAATTTACTGTCAACTGTTtacgaaaaaaaatcacaactaAAGACACATTTTTTATATATCCGAATGTGCAAGACAAATGTGACGTTAACTAG
- Protein Sequence
- MPRKYIKKLGPTRKQVYNPVYLRRAVDAVKRGMAIRRAAENFGVPYSTVYDNVRTPAERKIGGQPALSAIEERKLADALLLCADWGFPFKSYDVRYMVQQYLTKAGRTEKRFENNFPGVDWFKSFMGRHEDLTIKLAENTKRVRAAVTYEVVQKYFSELATTIDGVPPANIINYDETNFSDDPGQALVVVRKGKKHAHRVIDVSKSSTSVMFAVAGDGKLLPPYIVYKAKHMYEGWTEGGFPKARYNRTTSGWFDAETFEDWFMSIALPYFNSLEGNKVMLGDNLCSHLTVSVVEACENNDIKFVLLPPNSTDLLQPLDVAYFRPLKYAWKKTLEEWKLKNRGVLPKTIFPRLLNATIDKVGFRSGENTKAGFKACGIVPFNPDQTLKKIRHLKNTENAENDNEVEQTWSDTIVSHLRELRTGGESAPKRGKRVSVEAGKSVSVGDLINTLVETQPPEQEESMVEDQSPGMSQDLSDLSDVEEDQNNVDLNREENNENQIFGLGDFVIVKFATNKRDRFFIAKIEQINETGQFTVNCLRKKITTKDTFFIYPNVQDKCDVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01241733; iTF_01243201; iTF_01243204; iTF_01243205; iTF_01243179; iTF_01243182; iTF_01243221; iTF_01243164; iTF_01243196; iTF_01243198; iTF_01243199; iTF_01243200; iTF_00330515;
- 90% Identity
- -
- 80% Identity
- -