Chae054685.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- Prdm15
- Assembly
- GCA_958298965.1
- Location
- OY282602.1:8195497-8202162[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.044 6.8e+02 2.2 0.1 26 48 250 272 243 274 0.88 2 7 0.71 1.1e+04 -1.7 0.1 26 47 429 450 422 452 0.84 3 7 1.3 2e+04 -2.5 0.0 30 45 493 508 486 516 0.71 4 7 0.074 1.1e+03 1.5 1.3 26 46 518 538 510 541 0.87 5 7 5.3e-05 0.82 11.6 0.0 23 47 570 594 558 598 0.87 6 7 4.1e-07 0.0063 18.3 0.5 22 49 596 623 594 628 0.89 7 7 0.0003 4.6 9.2 0.0 21 48 635 663 629 665 0.87
Sequence Information
- Coding Sequence
- atgGAAGTGGCGTCAGAATTGACAAAACTTAAATCCGAAAAACAAGAAGTAGATGATAGAGTATGTGGAATATGCGGAGCTGATCATTCTCCAATGGATTGTAATATAATTCGATTGGTCTCCCATATACCAGATAAACCAATTCCGTCCAAAGCAAGACTGACTCTTCCTGATGATTTAGAAATAAGAACAATGGCAGATAATACATTTACAGTTGTGGCTTcgtattttatagaaaaaggAATGCAATTCGGGCCACTGCAAGCAAAAAAACTCTATACATTGTTACCAGTTATTGATTTTCCACTAAAACTATTTTATGACGCTGGCGAAGAGTTTTCAGAGTACTTTTTGGACACAAGCAACGAGAATGAGTGCAACTGGATGATGTTTATTTCTGCTGCAAGTAGTTTTGAGGAACAGAATTTAATTTGTTATCAGAATGGAGAAGATCTTTATTATGTGACTGTCAGAGATATCGTAGAAGGAGAGCAACTCAAAGTTTGGTATTCTCCACACTATGctataaaaatgcaaaaaagccTGTTGAGGCCTACTGTTCAACAAGACCAATCTAAAAGTATCGACCAAGCAATTGTTTCTGAGGTTTCAGAAACTTTAGTTAGGgctaaaaaaaatgtaaccccAAGAGACTCCTGGAGTTGCAAATATTGTGGAAAAGTTAATAAAAATCTTACAGAATTTGCAGTACACTTAGTTGGCCATTATCGAGCAAAATCGGgaagattttgccaaatatgtAATACAACTTTTAGAACTTCAAAGGGGTatcagaaacataaaaaaattgttcacagTGAAGGCATACCAAAAATATCTGAACCAGAAAAggatattccacaaaatttgcAACCAAAAGTACTGATAGAGAATAATCCAACAGGAGGACCTCTGCTGTCGAATGACATGAGTGACAGTCTCGACAATCCAACTTTAGTACTGCCCCAGAATTATCTGAGCGAATTTGAATTGGGAAACATAGAAAATCAAGGACATTTATGGGGAAATGAAAACCTACAGTTGAATACAGAATCAATTTTAAATGATAATGTAAAAGAAttggaatattttaattttgaactgAAAGAAACTGATAACGATCAACTAATGTGTGACATTTGTTTGAAATCCTTCAAGAAACTGTCACAGCTCATTCTGCATATGGCTCAGCATACAGGGAGATACACTTGCCATGACTGCAATAAGgTATTTGctagaaaagaaaattttcagttcCATGCTTGTAAATCATACTACAAAATCAAATGCACTCTCTgtgaaaaactgtttttccaAAAGAAATATCTTAGTCAGCATTTGACACAAGTTCACAATCGTATGTACACCTGTAAGTCCTGCAATAATTCGTATGACTCTAAAGAAAGCCTACGCAACCATGGATGCCCTAAAAAACACATACCGaccgaaaaaaagaaaatgttgtcATGTACGAAATGTTCCAAACAATTCACCCTCTTGAAGAACTTGAGGGTGCACTTGAGGGACCACGAACTTCCCAAAGAGAGATACACCTGCCTCATATGTAATATGGTTCTAaattcgagaaaatgttacttgAGACACATAAAACTGCATGAAGGAAATATTCATCAGTGCGAGAAATGTCAGAAGGTTTTCACAAGAAAAGACACCTTGAAGgaacatcaaaacaaaactcATTTTCAAGAAGAGGCAACTTGTGAAATTTGTAACAAAGTTGTGAAATCAAAGAAACTGTTGAAACATCACATGGAGATCCATAAAGAGAAGGATCTGAAATGCCCAGAGTGTCCTGCAGCATTCAAGCAAAAGAAAAACCTAAGAAGACATGTAAAATTGTGCCATATTTTAAACAAAGATATTCATAGTTCATTTTCTGATTCGCTCGAAAAACCTTATTCTTGCCcaaaatgtgataaaaaaatgaaacttaGCCATTCTGTGAAAAggcatattgaaaaatttcaccCAGAGTTTGAATATAGTTACGAAACtgtcaaatctaaaaaaacAAAGAACAAGAAGGTGACCGAATCTGAAAAAGGCGATGAAGATCCGGTTTTGGATTTGAAAGAGACcatcgaaaatatgaatttcagTACGGATGACATAACCTGCATCAACACAgaaataaatatcgaaattgaTAAATTGCTCAATAATCCGGAGAACTTTTCCTCTGATACCAATGACATATTAGTTGAGAGCCTGATAAACAGTGTTGTGAAAGATGATGAATTCGACAAGTCTGTTTTATTCAAGCAAAGAGACGTCTTCTTGTCCATGCCAGATCTTGATATCGACGATAATATGAGTTTGGGTAAGTTTGAGTTTTGCGACGAAAGGTAA
- Protein Sequence
- MEVASELTKLKSEKQEVDDRVCGICGADHSPMDCNIIRLVSHIPDKPIPSKARLTLPDDLEIRTMADNTFTVVASYFIEKGMQFGPLQAKKLYTLLPVIDFPLKLFYDAGEEFSEYFLDTSNENECNWMMFISAASSFEEQNLICYQNGEDLYYVTVRDIVEGEQLKVWYSPHYAIKMQKSLLRPTVQQDQSKSIDQAIVSEVSETLVRAKKNVTPRDSWSCKYCGKVNKNLTEFAVHLVGHYRAKSGRFCQICNTTFRTSKGYQKHKKIVHSEGIPKISEPEKDIPQNLQPKVLIENNPTGGPLLSNDMSDSLDNPTLVLPQNYLSEFELGNIENQGHLWGNENLQLNTESILNDNVKELEYFNFELKETDNDQLMCDICLKSFKKLSQLILHMAQHTGRYTCHDCNKVFARKENFQFHACKSYYKIKCTLCEKLFFQKKYLSQHLTQVHNRMYTCKSCNNSYDSKESLRNHGCPKKHIPTEKKKMLSCTKCSKQFTLLKNLRVHLRDHELPKERYTCLICNMVLNSRKCYLRHIKLHEGNIHQCEKCQKVFTRKDTLKEHQNKTHFQEEATCEICNKVVKSKKLLKHHMEIHKEKDLKCPECPAAFKQKKNLRRHVKLCHILNKDIHSSFSDSLEKPYSCPKCDKKMKLSHSVKRHIEKFHPEFEYSYETVKSKKTKNKKVTESEKGDEDPVLDLKETIENMNFSTDDITCINTEINIEIDKLLNNPENFSSDTNDILVESLINSVVKDDEFDKSVLFKQRDVFLSMPDLDIDDNMSLGKFEFCDER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00329983;
- 90% Identity
- iTF_00329983;
- 80% Identity
- iTF_00329983;