Chae017322.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- NRG1
- Assembly
- GCA_958298965.1
- Location
- OY282587.1:36638987-36649452[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.098 1.5e+03 1.1 0.0 27 45 146 164 138 177 0.77 2 5 1.7e-05 0.27 13.1 0.1 21 49 279 307 273 309 0.93 3 5 0.0057 89 5.1 0.0 21 46 386 411 382 416 0.90 4 5 0.00046 7.2 8.6 0.1 21 45 502 526 488 530 0.84 5 5 0.00023 3.6 9.5 0.5 22 46 532 556 526 560 0.80
Sequence Information
- Coding Sequence
- ATGAAAATAGAAATTAATGTAAATCCTATGTTACTTTCTAATAACAGTGTATCTATCAAAAATTTTGGAGCTATTTGCCGAGTCTGTTTACTCTCCAATAATTTGTTACCATTAATTTCTTGGgaagttgaaaatatatttgaaaaaataacgaaCATTAAGTTTAGAATGAACGAGGAACTTCCTGGAAATATTTGTGAAGGCTGCAGTAGGCAACTCAATGCAGTCGATCGATTCATAGAGAAATGTAAAAGTAATCATCACCTTCTTATGCTCAAGTTAGAACAACAATACCAAAGTGACGAAATTCCGGATTCATTCTGCTTTgataatgaagatttttcagTTGAAACTGAAAATAAGGTGATGATAAAGAACCTTGAAAATCTTCCAGACAAACAAGAACTGGAAAAGAAAAcgaacaaaatttttgaatgtgcAAAATGTGAAGCAAGTTTTAGACAAAAGTTGTCATTggtgaatcatttgaaaaaacatgctgaaaatgaaaaatattttaagacTGGTATAAAAAACTTTAACAGACCTTCGTTAAAGCATAAACATGCTATATATAATGTCAAAAAGTACAAATCTGATGGCAGAAAAGCTACCAGAAAATctgtttcaaaaacaaatatagAACATGTACTTCAGGCGAAAACAATCAAATCAAAGTACCACTGTTCCCAGTGCAATAGAGATTTAACTTCTCGGTCAGCTCTCTCCAGTCACATGAAAACTCACACTGGTGAAAGGCCATACTCTTGTTTGTATTGCGGTAAAACATTTTCCTACACAAGCAGCCTTACCGTACACACAAGATTACATACAGgGGAAACTCCGTATGTATGCTCAATATGCAATAAAGGTTATAGAAGTTCTACtagtttgaaaaaacacaaagaAGTCAAGCACTATGAGATCGAAGACAGCATAGAAGGCAGTAGTGGGGTTgacaaaaaagaaaatgaaaagaattTAAAAGTATCCAACAAACAAGAGTGCAATATTTGCCATAAATTACTGAATAAATATGGATTTGGTACCCATATGAGAATACATACTGTTAAGAAGAAACAATTCATGTGTGAATTTTGTaacaaacaatttcaaaaaaattcacacTTGGAAAGGCATATTAGAATACACACTGGTGAACGGCCTTACAAATGTGAATTGTGCAATAAGACCTTTGTACAAGATGGAGACTTGAAAAGACACATTTCGATTCATTCTggcgaaaaaaaatttcaatgtcaACATTGTGGCAAACAGTATTTCACAAAGGGAGCCTTAGCTACTCATATATCTATTCATGAAGTCGCAAGAAAAACATCAAACATCACTTGCAATATGTGCGAGAAAACTCTTGATCAATGTAGTCACAACAAGACTGTCAGCAGTTCTCATAAGGAATGTAATAGgaaatactTATGTacaatttgtggaaaatcgTTCACAGCTAGTGGAAGTCTCAAGGTACACACCAGAATACACACCGGTGAAACACCATTCACATGTACATTCTGTAACAAAGGTTACAACAACTCAAGTGCTTTGAGAAGACATGTCATCAGAAATCACAGTGAGGAAAAAACACATATCTGCATGATTTGCCACAAAAGTTTTCATGACTCTTCGAATTTAAAACGTCATGTCAGGAGAGTGCATTCTGTtgttgaaatgaaactaaattaTGCTGTATCTCAAGAACCTGATAAATGA
- Protein Sequence
- MKIEINVNPMLLSNNSVSIKNFGAICRVCLLSNNLLPLISWEVENIFEKITNIKFRMNEELPGNICEGCSRQLNAVDRFIEKCKSNHHLLMLKLEQQYQSDEIPDSFCFDNEDFSVETENKVMIKNLENLPDKQELEKKTNKIFECAKCEASFRQKLSLVNHLKKHAENEKYFKTGIKNFNRPSLKHKHAIYNVKKYKSDGRKATRKSVSKTNIEHVLQAKTIKSKYHCSQCNRDLTSRSALSSHMKTHTGERPYSCLYCGKTFSYTSSLTVHTRLHTGETPYVCSICNKGYRSSTSLKKHKEVKHYEIEDSIEGSSGVDKKENEKNLKVSNKQECNICHKLLNKYGFGTHMRIHTVKKKQFMCEFCNKQFQKNSHLERHIRIHTGERPYKCELCNKTFVQDGDLKRHISIHSGEKKFQCQHCGKQYFTKGALATHISIHEVARKTSNITCNMCEKTLDQCSHNKTVSSSHKECNRKYLCTICGKSFTASGSLKVHTRIHTGETPFTCTFCNKGYNNSSALRRHVIRNHSEEKTHICMICHKSFHDSSNLKRHVRRVHSVVEMKLNYAVSQEPDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00329901;
- 90% Identity
- iTF_00329901;
- 80% Identity
- iTF_00329901;