Chae020573.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282589.1:2906363-2907964[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.41 62 6.0 1.2 2 21 205 224 204 225 0.93 2 11 0.64 98 5.4 1.8 3 23 236 255 234 255 0.93 3 11 5.1e-05 0.0079 18.3 3.5 1 23 261 283 261 283 0.97 4 11 4.7e-07 7.2e-05 24.7 0.2 1 23 289 311 289 311 0.98 5 11 3.7e-06 0.00056 21.9 0.8 1 23 317 339 317 339 0.98 6 11 0.00064 0.098 14.9 1.3 2 23 353 374 352 374 0.96 7 11 2.5e-06 0.00038 22.5 0.5 1 23 379 401 379 401 0.95 8 11 2.3e-05 0.0035 19.4 1.4 1 23 407 429 407 429 0.96 9 11 3.1e-06 0.00047 22.2 2.4 5 23 439 457 436 457 0.95 10 11 8e-05 0.012 17.7 3.5 1 23 463 485 463 485 0.96 11 11 4.1e-06 0.00063 21.8 1.8 1 23 491 513 491 513 0.98
Sequence Information
- Coding Sequence
- ATGTCACCAAaagatttcaaattattatgcCGATCTTGCCTTGGAAAAAGGGGCTTATTCAACTTATTTGATACTAAACATGAAAATTCCTCATTAAGTGAATTGTATGGTATGATATGTTCATTCAAATTGACCGAGTCTGATATACCTGCGAAGCTGTGCAATGGTTGCGTTGATTTTCTCAAACAGGTTTACTTCTTCAAGAAGCGAGCTCAAGAGTCAGAAACAATcctaaaaagtttatttttgaaaaacgagGAACAAACATCATCTTCCAGTAGTATCGTAATAACTTGTGAAGGTGAAGTTGGTAATGTCAACTATAATCACGTTGATCAGTGTGATTTTCCTCTAGAAAAGAGATCTGGAGAGCCtgaaatatatccaaaaatttCTTTTGGGAGGGCTGAACCAGTATTATCTCGGAATACTGATATTGTTAAGTGTGAAAGTGAGTTGAGCAGTGTCAAATATGATCACATTGAAGGCTGTGATTTTTCCCAAGAAAATACTTCTGAAAATGGTACCAGTAGTACCTGTAATAAACTAGAAATAAGTAATACCCATAATTCTATTAAAAAACGCTGTTCCAGAAAAATTCCTGCTGATTTAACATGTACTTTTTGCAGCATCAAATTCGACTCTTATATTTCTTACAAACTACATCGAAAAAAAGAAGCTGATcagaggagaaaaaaaaaaccttgctCAGTGTGTCATAAATACATAAGCACATATAAACTGAAGGATCACATCAATTCTCACACAAAAGACAGACCTTATGAGTGTGAGATTTGCAAAGAAAAATTTAGGTTCAGATCTAGTTTGACTCGACACAAGTTCAGACATGATGAGAAAAAGCCTCACGAGTGCAATATATGTGGGAAAGGATTCATTCAGGCTCCAACTCTGACCGATCATATTCGAACACACTATGGAGAAAAATCCTTCATATGCAATGTTTGTGGTAAATTCTTCGTAACCAAACACGCATTGGGAAATCACATCAATATGCACAAATCGAAAGATACTCAGACAGGTTTGGATAACAACCTGACTTGTAAAGAATGTGATAACACGTTCACCTCAAAAACCATACTGAAGCAGCACATGACCATTCATAATAAAAAGCAATTTTTATGCAGTGAGTGCGGTAAGAAGTTTTCCACAAAAGCATTACTCGACTCCCATATCAAAGTGCATTCTGGTGTCAAACCGTATCTTTGCCAGATTTGTGCCAAAGGATTCTCTCAGAAGAATAGCTTACAGAAGCATAACCGTACACACACTGGGGAAAAACccgttttatgtattatatgtGGCAAAACGTTCTCACAAAAAGGACATCTCACCTATCACATGCGAAGGCACAGTGGAGAGAGACCTTATAGCTGTATCCATTGCGATAAGACATTCAACCACACAGGTTCACTCAAAGTTCACATCAGAATCCATACTGGCGAAAAACCGTTCGTTTGTGATATTTGTTCTAAAGGCTTTTACGATTCGAGTAGTATGAAGAAACACAGAAAAACCCATGTGATATGA
- Protein Sequence
- MSPKDFKLLCRSCLGKRGLFNLFDTKHENSSLSELYGMICSFKLTESDIPAKLCNGCVDFLKQVYFFKKRAQESETILKSLFLKNEEQTSSSSSIVITCEGEVGNVNYNHVDQCDFPLEKRSGEPEIYPKISFGRAEPVLSRNTDIVKCESELSSVKYDHIEGCDFSQENTSENGTSSTCNKLEISNTHNSIKKRCSRKIPADLTCTFCSIKFDSYISYKLHRKKEADQRRKKKPCSVCHKYISTYKLKDHINSHTKDRPYECEICKEKFRFRSSLTRHKFRHDEKKPHECNICGKGFIQAPTLTDHIRTHYGEKSFICNVCGKFFVTKHALGNHINMHKSKDTQTGLDNNLTCKECDNTFTSKTILKQHMTIHNKKQFLCSECGKKFSTKALLDSHIKVHSGVKPYLCQICAKGFSQKNSLQKHNRTHTGEKPVLCIICGKTFSQKGHLTYHMRRHSGERPYSCIHCDKTFNHTGSLKVHIRIHTGEKPFVCDICSKGFYDSSSMKKHRKTHVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00328482;
- 90% Identity
- -
- 80% Identity
- -