Came023878.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293413.1:32125494-32127122[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.43 75 6.0 1.2 2 21 205 224 204 225 0.93 2 11 1.8 3.1e+02 4.1 1.3 3 23 236 255 235 255 0.90 3 11 0.00025 0.042 16.2 3.7 1 23 261 283 261 283 0.97 4 11 5e-07 8.6e-05 24.7 0.2 1 23 289 311 289 311 0.98 5 11 2.2e-06 0.00038 22.7 0.8 1 23 317 339 317 339 0.98 6 11 9.8e-07 0.00017 23.8 0.7 2 23 354 375 353 375 0.96 7 11 4.3e-06 0.00075 21.7 0.5 1 23 380 402 380 402 0.95 8 11 6.2e-06 0.0011 21.2 1.3 1 23 408 430 408 430 0.95 9 11 3.3e-06 0.00056 22.1 2.4 5 23 440 458 437 458 0.95 10 11 9.5e-05 0.016 17.5 1.8 1 23 464 486 464 486 0.96 11 11 2.5e-05 0.0043 19.4 2.0 1 23 492 514 492 514 0.96
Sequence Information
- Coding Sequence
- ATGTCACCAAaagatttcaaattattatgCCGATCATGCCTTGAAAATAGGGGCTTATTCAACTTATTTGATACTAAACATGAAAATTCCTTCTTAAGTGAAATGTATGGTTTGATATGTTCATTCGAATTGACAGAGTCTGATGGTTTACCTGTAAAGCTATGTAACAGTTGCATAGATTTTCTTAAACAAGTTTACTCTTTCAAGAAGCGAGCTCGAGAGTCTGAAACAATCCTAAAAAGTTTATTTGTGAGGAATGAAGAACAAACATCGTCTTCCAATAGGATTATAATAAAATGTGAAAGTGAGTTCAATAATGTCAACTATGATCAGGTTGACAGGTGGGATTTTCCTCAAGAAAAGAAATCTCGGGAAtctcaaacaattcaaaaaaattcttatgggAGGGTTGAAGAACCAGTATTATCTGAGAACAATATTCTGGTGAAGTGTGAAAGTGGGTTAAACAGTgtcaaatataatattgaaaggAGTGATTTTCCCCAAAGAAATACTTCTGAAGATGATACCATTACCAGTAATAAACTGGAAATGAGTAATACCCAGGATTCTGATATTAAACGCTCTTCTAGAAAAATTCCTGCAGATCTAACATGTACTTTTTGCAGCATCAAATTTGACTCTTATATTTCATACAAACTACATCGAAAAAAAGAAGCAGAtcagagaagaaaaaaaaaaccgtGCTTGGTATgtcataaatatataagtacttatAAACTGAAGGATCATATCAATTCTCACACAAAAGACAGACCTTATGAGTGTGACATTTGTAAAGAAAAATTTAGATTTAGAACTAGTTTGACTCGACATAAGTTCAGACATAATGAAAAAAAGCCACACGAGTGCAATATATGTGGAAAAGGATTCATTCAAGCTCCAACTTTAACTGACCATATTCGAACACACTATGGAAAAAAATCCTTCATATGCAATATTTGTGGTAAATTCTTTGTAACCAAACATGCATTGGGAAATCACATAAATATGCACAAATCGAAAGATAATCAGACATCTTTGAATTATAGAGACCTAACTTGTAAAGATTGTGATAAGACTTTCACCTCTAAAATCTTACTAGAGCAGCACATGTACATTCATAATAAAAAGGAATTTTTGTGTAGTGAGTGTggtaagaaattttcaacaaaagtaTTACTTGACTCTCATATCAAAGTGCATTCTGGTGTCAAACCATATCTTTGTCAGATTTGTGATAAAGGATTTTCTCAAAAGAATAGCCTACAGAAGCATAACCTCACACACACTGGAGAGAAACCTGTTTTATGCAttatatgtggcaaaacatttTCCCAAAAAGGACATCTTACGTATCACATGCGCAGGCATAGTGGAGAAAGACCTTATAGTTGTATCTATTGTGATAAGACATTTAATCACACAGGCTCGCTCAAAGTTCATGTCCGAATACATACTGGAGAAAAACCGTTTCTTTGTGACATTTGTTCAAAAGGCTTTTATGATTCAAGTAGTATGaaaaaacacagaaaaacacATCAATCATCAAAACAATCTGAATTGAATCATTAG
- Protein Sequence
- MSPKDFKLLCRSCLENRGLFNLFDTKHENSFLSEMYGLICSFELTESDGLPVKLCNSCIDFLKQVYSFKKRARESETILKSLFVRNEEQTSSSNRIIIKCESEFNNVNYDQVDRWDFPQEKKSRESQTIQKNSYGRVEEPVLSENNILVKCESGLNSVKYNIERSDFPQRNTSEDDTITSNKLEMSNTQDSDIKRSSRKIPADLTCTFCSIKFDSYISYKLHRKKEADQRRKKKPCLVCHKYISTYKLKDHINSHTKDRPYECDICKEKFRFRTSLTRHKFRHNEKKPHECNICGKGFIQAPTLTDHIRTHYGKKSFICNICGKFFVTKHALGNHINMHKSKDNQTSLNYRDLTCKDCDKTFTSKILLEQHMYIHNKKEFLCSECGKKFSTKVLLDSHIKVHSGVKPYLCQICDKGFSQKNSLQKHNLTHTGEKPVLCIICGKTFSQKGHLTYHMRRHSGERPYSCIYCDKTFNHTGSLKVHVRIHTGEKPFLCDICSKGFYDSSSMKKHRKTHQSSKQSELNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00329911;
- 90% Identity
- -
- 80% Identity
- -