Chae026362.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysolina haemoptera
Gene Symbol
Hr39
Assembly
GCA_958298965.1
Location
OY282591.1:3288963-3301797[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2.5e-08 0.00051 21.3 0.0 1 24 226 249 226 264 0.86
2 3 0.018 3.8e+02 2.0 0.0 79 115 279 315 244 329 0.64
3 3 8.6e-74 1.8e-69 236.9 0.1 205 408 357 555 336 555 0.96

Sequence Information

Coding Sequence
ATGGAATCAGACGGTAAGGGATTGTCCCCTTATGAAATGCCGGGAGACAGTTCGTTACCTGCCATGCGATTCAGTAAAAGGCCGCAGACAGTCATTCCCAAAAGGGAGGACTGGGGGCGGATCGGGTACCGCTTGCTTCCCACCAAGgggatcatctggtacacaTATGGCTCCAGGATGGGTGAATCATCCGGCGCCGGGGTATACGGTCTCTGTTACGCTCTAGGAACTTTTGCTACTGTATTTCAGGCAGAAATGTTTGCCATCCTCGCCTGTGGTAGACATATACATAGTATTCACAGTAGCCCTCTTCATCATAACCTACTTTATCGAAGCCTCCAAGACGAGAACACACAATATGCCGTCGAACAAGAAAATCTTGAGGAAACCGAAGATAAAACGGGTCTCATCCACACATCACTGCCTGCTCAACCTGGCATTTCAAGGCAACAGCTAATAAACAGCCCGTGTCCCATTTGTGGGGACAAAATATCTGGATTCCACTACGGCATTTTCAGTTGTGAGTCGTGTAAAGGTTTTTTCAAAAGGACTgttcaaaatagaaaaaattatgtgtgtcTCAGAGGAGCTCAGTGTCCTGTAACTGTCGCCACAAGAAAAAAGTGCCCGGCTTGTCGTTTCGAAAAATGCCTTCAGTGTGGGATGAAATTAGAAGCAATTCGTGAAGACAGAACTCGTGGGGGTAGGTCAACATATCAATGTTCATATTCTTTGCCGCCATCCTTAACCAACCATGCAGAACTAAGGGCGAGTTCGACTGATTTGAGGCAAGGCATGGGTGATGGCCATTCAGGGTTTACTGTAAAACAGGAACCTCCGGATTCCAGTCTTTCACATCATAAAAGAACTACATATCCAGGTTCCAAAGGTGTCCCACCATTATTGCAGGAAATAATGGATGTGGAGCACCTGTGGCACTACAACGAAATGGAACTGAATAAGCTCAGCACAGAGGGTCATCTGGGAAAAGAGGGATCTAGTGGGGCTGTACACAATCTTTCCACCCATCCACTCTTGGCTGGTACAGCATTGGCTGGTTCGACAGATACAAATCCGGATTTTGTAGCGAATCTCTGCAATATTGCTGATCATAGACTTTACAAAATTGTGAAGTGGTGCAAAAGTCTTCcattgtttaaaaatatttcgattgaCGACCAAATTTGTTTGCTAATCAACTCTTGGTGTGAGCTGCTTCTATTTTCCTGTTGTTTTCGATCAATGTCCACCCCAGGCGAGATAAGAGTTTCGCTTGGAAAAAGCATAACGCTAGCGCAAGCTAGAGAAATGGGGTTGCAGCCTTGTATAGAGAGAATGTTGAATTTCACTGAGCAACTAAGAAGATTGAGGGTGGATCAATACGAATACATAGCAATGAAAGTCATTGTTCTTCTTACATCTGATACTTCCGAATTAAGAGAGGCAGAGAAAGTGAGAGTCTCACAAGAAAAAGCTTTAAAAGCTCTACAAGATTACACTTTGTCGCATTATCCTGAGAGTCCCTCGAAATTTGGAGAATTGCTTTTAAGGATTCCTGAGTTGCAAAGAACTTGCCAAGTGGGAAAAGAAATGTTAACAATCAAATCAAAAGATGGCGATGGACCCAGCTTCAACCTCCTAATGGAACTCCTGAGGGGAGACCACTGA
Protein Sequence
MESDGKGLSPYEMPGDSSLPAMRFSKRPQTVIPKREDWGRIGYRLLPTKGIIWYTYGSRMGESSGAGVYGLCYALGTFATVFQAEMFAILACGRHIHSIHSSPLHHNLLYRSLQDENTQYAVEQENLEETEDKTGLIHTSLPAQPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAQCPVTVATRKKCPACRFEKCLQCGMKLEAIREDRTRGGRSTYQCSYSLPPSLTNHAELRASSTDLRQGMGDGHSGFTVKQEPPDSSLSHHKRTTYPGSKGVPPLLQEIMDVEHLWHYNEMELNKLSTEGHLGKEGSSGAVHNLSTHPLLAGTALAGSTDTNPDFVANLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLAQAREMGLQPCIERMLNFTEQLRRLRVDQYEYIAMKVIVLLTSDTSELREAEKVRVSQEKALKALQDYTLSHYPESPSKFGELLLRIPELQRTCQVGKEMLTIKSKDGDGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01296227;
90% Identity
iTF_01047319;
80% Identity
iTF_00329732;