Chae006239.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282585.1:4703596-4705518[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-08 2.6e-06 28.7 0.0 4 39 18 53 16 57 0.89
Sequence Information
- Coding Sequence
- ATGCCGTCGAACTACGTAAGGAAGTCAACCCAACAGTCATGGAATCCTATAGCAATGCAACAGGCTATAGCAGCAGTAAGAGGTGATAATATGCCGTTTGCTACCGCAGCCAGACAGTTTAATGTCCCACGAAGTACCCTCAAAAGGAGGGTTCTCGAGAAAAATCGCGATGCCATTGAAGATAAAAAGATTCTAGGAAGATATCGATGTGTATTTAATCAGGAACAAGAGGAAGAACTCCTTAATCATATCTTTGATATGGAACAACGATTTTATGGTATTTCAATGCAGGATCTACGCCATTTGGCATATCAGCTtgctgaaaaaaacaatataccgCATCGATTCAACAAAGAGAAGAGAATGGCAGGCAAGGATTGGGTAACATGCTTTAGAAAACGCCACCCCAATATTGCCCTAAGAAAACCAGAATCCACGTCGATGGCCAGAGCACAGGGGTTTAATAGAACCaatgttaacaatttttttaacatccTTCAAACAGTGCAAGACAAACATTTCCATCCTGCTCATCGAGTATATAATGTCGATGAAACTGGTCTTTTGACAGTTCAAACGAGGAACACTAAAGTTTTCTCGCTCAAGGGGAGGCGTCAAGTTGGTGCTATTACGTCAGCGGAAAGAGGTTTGCTGTCGACATTTGCAGTTTGCATGTCCGCAGGAGGCACTTTCGTCCCTCCATTTGTGATTTTTCCAAGAAAACGAATGAAGATTGACCTTCAAGATGGAGCTCCCCCAGGAACCGAGTTTGCCTGCAATCCCAGCGGATGGATGCAGACGGATATATTCATGCAATGGttcgatcattttttgaaacatgCCAAACCATCCGAACAAGATCCAGTGCTGCTAATACTGGATGGTCATTCCACCCACACCAAAAATATTGACTTTATAGAAAAGGCCAGAAACAATTTCACAACAGTCGTATGTTTACCCCCCCACTGCAGCCACAAGATTCAACCTCTGGATGTGTCATTCATGGCACCTTTCAAAACTTTCTACGTCCAAGCTTGTGAAAAATTCCTGCGTAACAACCCGGGCAGAGTTATTACACAATTCCAGATCAGTAGACTTCTTGGAGAGGCATTTTTGCAAGCAGCTGTGCCAACTACGGCTATAAATGGATTTCGCAAGTGTGGCATTTTCCCTTTGGACCCGAACGTGTTTTCTGACGTAGATTTTGTTGCTTCAGAGGTATCTGATATTCCCATGATTCCTGAAAACAATAATCCCCCTAATGCTGAAGACGGTGTatcaaatgataaaaatgcagcaGTAGATGGACGAGCAGCTGCAGCAGTAGATGGACGAGCAGATGCAACTACTGATGAAGTAGGAGCAGTGGTTGGACCAGAAGCTGAAGTTGCAGATGAAGAACATGCTTCGACATCACAACCCAAATCATTTGCAATACTAAGCCCAAAAGACATTATTCCTTTGCCTAAACAAAAAAGcctaaaacaaagaaaaacaaaCCGAAAAAAGGGTAAGACAGCGATAATAACATCTAGTCCATACAAAAATGAACTCttacaagaaaaattgaaaaaagaggtTGAGgataataaaaagaaaagaaagcaTGATGAAAATGACGTGAAACCTTCAACATCCAAAAGTGTCCAGGTGaagaaaaaacagaaaagaCAAATTAAAAGGGAAATACAATCAAAAAAGGAGATTGcaaaaaaacagctttttcaatCAGATGATGATGAATCAGATGATCAACCATACGATGAACAAGATGTGGAATGTTTTTATTGTCGTGGGCCGTTCTCGAAGTCTAAGGATAACGAAGGTTGGATTAGGTGTTGCAAATGTAAGCAATGGGCACACGAAGAATGTGCCGGTTGCGAAGATGACGACGACGAGTTTGAATgcgaattttgtaaatga
- Protein Sequence
- MPSNYVRKSTQQSWNPIAMQQAIAAVRGDNMPFATAARQFNVPRSTLKRRVLEKNRDAIEDKKILGRYRCVFNQEQEEELLNHIFDMEQRFYGISMQDLRHLAYQLAEKNNIPHRFNKEKRMAGKDWVTCFRKRHPNIALRKPESTSMARAQGFNRTNVNNFFNILQTVQDKHFHPAHRVYNVDETGLLTVQTRNTKVFSLKGRRQVGAITSAERGLLSTFAVCMSAGGTFVPPFVIFPRKRMKIDLQDGAPPGTEFACNPSGWMQTDIFMQWFDHFLKHAKPSEQDPVLLILDGHSTHTKNIDFIEKARNNFTTVVCLPPHCSHKIQPLDVSFMAPFKTFYVQACEKFLRNNPGRVITQFQISRLLGEAFLQAAVPTTAINGFRKCGIFPLDPNVFSDVDFVASEVSDIPMIPENNNPPNAEDGVSNDKNAAVDGRAAAAVDGRADATTDEVGAVVGPEAEVADEEHASTSQPKSFAILSPKDIIPLPKQKSLKQRKTNRKKGKTAIITSSPYKNELLQEKLKKEVEDNKKKRKHDENDVKPSTSKSVQVKKKQKRQIKREIQSKKEIAKKQLFQSDDDESDDQPYDEQDVECFYCRGPFSKSKDNEGWIRCCKCKQWAHEECAGCEDDDDEFECEFCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00398967;
- 90% Identity
- iTF_00329186; iTF_00329187; iTF_00329188; iTF_00329189; iTF_00329190; iTF_00329191; iTF_00329192; iTF_00329193; iTF_00329194; iTF_00329195; iTF_00329196; iTF_00329197; iTF_00329198; iTF_00329199; iTF_00329200; iTF_00329201; iTF_00329202; iTF_00329203; iTF_00329204; iTF_00329205; iTF_00329182; iTF_00329183; iTF_00329184;
- 80% Identity
- iTF_00329186; iTF_00329187; iTF_00329188; iTF_00329189; iTF_00329190; iTF_00329191; iTF_00329192; iTF_00329193; iTF_00329194; iTF_00329195; iTF_00329196; iTF_00329197; iTF_00329198; iTF_00329199; iTF_00329200; iTF_00329201; iTF_00329202; iTF_00329203; iTF_00329204; iTF_00329182; iTF_00329183; iTF_00329184;