Came027431.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- stc
- Assembly
- GCA_958502065.1
- Location
- OY293413.1:78412408-78417517[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.8e-08 0.001 21.0 14.4 4 19 31 46 24 46 0.87 2 10 0.61 2.2e+04 -2.5 2.0 5 10 75 80 75 80 0.93 3 10 0.033 1.2e+03 1.6 7.2 1 11 86 96 86 98 0.94 4 10 0.58 2.1e+04 -2.4 1.0 4 10 101 107 100 108 0.62 5 10 4.1e-09 0.00015 23.6 17.1 1 18 113 130 113 131 0.98 6 10 0.39 1.4e+04 -1.8 0.7 6 10 160 164 159 165 0.82 7 10 0.0017 61 5.7 15.3 1 19 170 187 170 187 0.93 8 10 1.5 5.3e+04 -3.7 0.4 9 11 205 207 205 208 0.74 9 10 6.6e-10 2.4e-05 26.2 15.7 1 19 223 242 223 242 0.97 10 10 0.075 2.7e+03 0.4 18.3 1 18 252 270 252 271 0.92
Sequence Information
- Coding Sequence
- ATGTTCAATGCAGCTACAGATAATATttctataccgggtgaccacgagATTTGTTCAAAACCTTTGAAATGTGGCCAGCCAAGCTCCCCACATAGGTGTGAGGAATATTGCCATGAAGGAGACTGTCCTCCTTGTCCTTTAACTACTGTGGTGAGATGTCGTTGTGGCTATATGGACAGGGAATTGTCCTGTCAAAAATTAACTACCAAGGCTGATGATGCCAgatgtgaaaaaaaatgtaccaagAAACGCTCTTGTGCCAAACACAAATGCAATCAAAGATGCTGCATAGAAATTGAACACATCTGTCCACTACCATGCAACCATCAACTTTCATGTGGTCAGCACCGTTGTCATCGTACTTGCCATTCCGGTAGGTGTCCCCCCTGTATGGAAACTAGTTTTGAGGAGCTCTATTGCGAATGTGGAAAGAGTGTGCTTTTCCCACCTATTCCTTGTGGTACTAAACCTCCCAGTTGCAGCGAACCATGTTCTAGACAACGGCCTTGTGGTCATGAACCTAATCACTCTTGTCACACGGGGTCTTGCCCTCCTTGTACTGTCCTTTCTAAAAGGTGGTGCTATGGAAATCATGAGCAACGGGCAGCAATTCCCTGTCATCAAGAAAATTTCAGTTGTGGTTTGCCTTGTGGAAAAGAAATGCCTTGTGGCAGGCACACATGTAATAAAACATGTCATGATGGCCCTTGTCCAAGTCCTTGTAAACAGCTCTGCAGTGTATTGAGGAGTTTATGTGGACATCCTTGTGGTAGACCATGCCATGGGCCTCCATGCCCAGAAAGCAGTTGTAGACAAAATGTACCTATTACTTGTTTGTGTGGAATCCAGAAAAGCACAAGACCTTGCATAGAAGTTGCTGACGAATTCAAGAATATCCAAATGGCACAAATCAAGGATAAAATGGGCGTTTTATCTAGTAGCCATGCTGTAGATATATCAGACATTCTGAACGTTCCTAAGAAACCTTCAGTCCTGAAAATTTTGGAGTGTACCGAAGAATGCCGAGTTTTGGAAAGGAACCGCAGATTAGCTATAGGTTTGCAAATACGTAATCCAGACCTCAGCCAAAAATTAACGCCGAAGTACTCGGATTTCATGAGACTTTGGGCTAAAAAAGACCCCCATTTCTGTCAAAGAGTTCATGATAAGTTAAGTGAACTCGTACAACTAGCCAAAAACAGCAAACAAAAAAGTCGATCCTATTCCTTTGAATCAATGAATAAGGACAAGCGCCATTTCATCCACGACTATTGCGAACATTTTGGAGTAGAGAGTGCAGCTTATGATATGGAACCAAATAGGAATATAGTAGCTACTGCTATTAAGGAAAAATCGTGGCTACCCAGCATGGGCCTATTAGAAGTCATTCAAAGGGAAAATGGCCAGAGAAAGGTACCGGGACCAATGTCTGTGTCAAGTAGAACTCCGTGTAGTAAACCAGAAATCATGTTGTTGAAGTTGCCTAGCAGAGTACAGAGGGCTGGTACACCTCCTGGCGAACTTGTTGATGGCTACAATCCACCTTTATAG
- Protein Sequence
- MFNAATDNISIPGDHEICSKPLKCGQPSSPHRCEEYCHEGDCPPCPLTTVVRCRCGYMDRELSCQKLTTKADDARCEKKCTKKRSCAKHKCNQRCCIEIEHICPLPCNHQLSCGQHRCHRTCHSGRCPPCMETSFEELYCECGKSVLFPPIPCGTKPPSCSEPCSRQRPCGHEPNHSCHTGSCPPCTVLSKRWCYGNHEQRAAIPCHQENFSCGLPCGKEMPCGRHTCNKTCHDGPCPSPCKQLCSVLRSLCGHPCGRPCHGPPCPESSCRQNVPITCLCGIQKSTRPCIEVADEFKNIQMAQIKDKMGVLSSSHAVDISDILNVPKKPSVLKILECTEECRVLERNRRLAIGLQIRNPDLSQKLTPKYSDFMRLWAKKDPHFCQRVHDKLSELVQLAKNSKQKSRSYSFESMNKDKRHFIHDYCEHFGVESAAYDMEPNRNIVATAIKEKSWLPSMGLLEVIQRENGQRKVPGPMSVSSRTPCSKPEIMLLKLPSRVQRAGTPPGELVDGYNPPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01106861;
- 90% Identity
- -
- 80% Identity
- -