Came066967.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293421.1:46392364-46393755[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0035 43 6.3 0.0 19 43 118 142 109 150 0.85 2 9 0.0055 66 5.7 0.0 21 43 176 198 169 206 0.88 3 9 0.031 3.7e+02 3.3 0.0 21 52 232 263 219 265 0.86 4 9 0.0059 71 5.6 0.1 23 43 262 282 258 287 0.88 5 9 0.016 1.9e+02 4.2 0.1 21 43 288 310 283 315 0.88 6 9 0.0012 15 7.7 0.1 21 43 316 338 311 343 0.88 7 9 0.0011 14 7.9 0.1 21 46 344 369 340 375 0.85 8 9 0.0064 78 5.5 0.0 21 43 372 394 368 402 0.88 9 9 0.0063 76 5.5 0.1 22 44 429 451 405 457 0.89
Sequence Information
- Coding Sequence
- ATGAATCAAATCAAAAGAGATAGTATctctgatgtcgatgtggtatGCGACGCAAGTATAGTGAAGTATGAGGCTAGTGATATTGGAATATGCAGTGGAAGTAACAACAAACATCTGGACTCCTTGGATTTATCAACAACTGAATGCAAAGCAGAACAAGATGACATCGATATTCATTACGAAGATGTCAAATCTGAAATTGTTGAGAAGAAGTCAGGAAAATGTCAGTTGTCTAAGAATGATGTCATTAGCGAATGGAATGGGGAAAGTCAATCAGGAGATAAACCAATCGATCGCAAGATCTGCTCAAAATCTCTTCGTTACAAAAGTTCAGAAGCACATAAAAAAATGACAACAgaagaaaaaccatttcattgcaagGTTTGCTCGAAAGCATTTGCTGCATCCGGTAATATGAAAAGGCATGAGAGAAGTCATACAGGAAAGAAATTATATACTTGCAAACTTTGCTCCAAAGGTTTCACTACTTTGGAATATTTGAAGGTCCATGAGAGGATGCATACAGGAGAGAAACCATTCCATTGCAAGGTTTGCTCGAAAGCATTTGCTGCATCCGGTAATATGAAAAGGCATGAGAGAAGTCATACGGGAAAGAAATTATATACTTGCAAACTTTGCTCCAAAGGTTTCACTACTTCGGGATATTTGAAGGTCCATGAGAGGATGCATACAGGAGAAAGACCATTCCATTGCAAGATTTGCTCCAAGGCTTTTGCTGATTCGGGTTATTTGAAGGTCCATGAAAGAATACATATAGGAGCAAAACCATTCCATTGCAAGTATTGTTCCAAGGCTTTCACTCAATCGAGTAATTTGAGGGAGCATGAGAGGATACATACGGGAGAAAAACCATTCCGATGCAAGATTTGCTCCAAGACTTTCGCTCATTCGAGGAGTTTAAATATCCATGAGAGAATACATACGGGAGAAAAACCATTCCATTGCAAGATTTGCTCCAAGACTTTCGCTCAATCGAGGAGTTTGAATATCCATGAGAGGATGCATACAGGAGAGAAACCATTCCATTGCAAGATTTGCTCCAAGGCTTTCACTCAATCGAGTCATTTGAAGAAGCATGAGAGGATACATACAGGAGAGAAACCATTCCATTGCAAGGTTTGCTCGAAGGCATTTGCTGCATCCGGTAATATGAAAAGGCATGAGAGAAGTCATACGGGAAAGAAATTATATACTTGCAATCTTTGCTCCAAAGGTTTCACTACTTCGGGATATTTGAAGGTCCATGAGAGAATACATGCAGGAAAAAAACCATTCCATTGCAAGATTTGTTCCAAGGCTTTCACTCAAACGACTAATTTGAAGGAGCATGAGAGAATACATACGAGAGAAAAATGGTGCGAAAATAACTAA
- Protein Sequence
- MNQIKRDSISDVDVVCDASIVKYEASDIGICSGSNNKHLDSLDLSTTECKAEQDDIDIHYEDVKSEIVEKKSGKCQLSKNDVISEWNGESQSGDKPIDRKICSKSLRYKSSEAHKKMTTEEKPFHCKVCSKAFAASGNMKRHERSHTGKKLYTCKLCSKGFTTLEYLKVHERMHTGEKPFHCKVCSKAFAASGNMKRHERSHTGKKLYTCKLCSKGFTTSGYLKVHERMHTGERPFHCKICSKAFADSGYLKVHERIHIGAKPFHCKYCSKAFTQSSNLREHERIHTGEKPFRCKICSKTFAHSRSLNIHERIHTGEKPFHCKICSKTFAQSRSLNIHERMHTGEKPFHCKICSKAFTQSSHLKKHERIHTGEKPFHCKVCSKAFAASGNMKRHERSHTGKKLYTCNLCSKGFTTSGYLKVHERIHAGKKPFHCKICSKAFTQTTNLKEHERIHTREKWCENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00328447;
- 90% Identity
- iTF_00328447;
- 80% Identity
- iTF_00328447;