Came066966.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293421.1:46390678-46391772[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.001 12 8.0 0.0 26 43 159 176 152 185 0.85 2 7 0.0059 71 5.6 0.0 18 43 178 204 177 209 0.81 3 7 0.0035 42 6.3 0.0 21 46 210 235 206 241 0.85 4 7 0.00092 11 8.2 0.0 21 46 238 263 234 269 0.85 5 7 0.0086 1e+02 5.1 0.1 21 46 266 291 261 298 0.84 6 7 0.03 3.6e+02 3.3 0.0 23 43 296 316 290 321 0.88 7 7 4.8e-05 0.59 12.3 0.1 21 43 322 344 317 351 0.90
Sequence Information
- Coding Sequence
- ATGAATCGATTCAAAAGAGAAAGTAACTCTTATGTCGAAGAGGTATTCGACGCAAGTATAGTGAAGTACGAGCCTTGTGATATTGGAATATGCAGTGAAAATAGAAGTTATGATGTTTCTGGAAGTGTAGGAGACATTATGAATCACAAAAATACATCTATAAAATACGAAGTACAGAACGATGAAGAATATCATGCAGTAGAGCTGAATAACAAAGACATAGGCTTCATGGATCTATCAACTGTATGCAAGGCAGAACAAGATGACATCGATATTCATTACGAAGATTTCAAATCTAAAATTGTTGAGAAGCCAGTAAAATGGGGACTCCATCAGTTGTCTAAGAACGATGTCGTTAGCGAGTTGAAATGCAATGGGGATAGTCATTCAGGATCGAAACCATTCGAATGCAAGATCGGCTCACAGTCTCTTTGTTACAAAAGCTTTTTAGGAGCAACAGAAGAAAAACTATTTCATTGCAAGATTTGCTCGAAGGTATTTGCTACATCCGGTAATTTGAAAAGGCATGAGAGAAGTCATACGGAGAAGACACTATATACTTGTAAAGTTTGCTCCAAGACTTTTACTCAATCAAAGAGTTTGAAGGACCATGAGAGGATACATACAGGAGAGAAACCATTCCATTGCAAGATTTGCTCCAAAACTTTCACTAAATCAAGTAATTTGACGGAGCATGAGAGAATACATACAGGAGAGAAGCCGTTCCATTGCAAGATTTGCTCCAAGACTTTTACTCAATCAAAGAGTTTGAAGGACCATGAGAGGATACATACAGGAGAGAAACCTTACCATTGCAAGACATGCTCCAAAGTTTTCAATCAGTCGAGTAGTTTGGTGGCCCATGAGAGGATACATACAGGAGGAAAACCATTCCACTGCAAGATTTGCTCCAAGACTTTCACTCAATCGGGAGATTTAAAGGTCCATGAGAGAATACATACAGGTGAAAAACCATTCCAttgcaaaatttgcttcaaagcTTTCAGTCAATCGAGTAGTTTGAAAAGGCATGAAAGGAATCATACTGAGTTATTTGGAAGAATTGAAGAAGTAATACAAGGCAGAACAAAATGA
- Protein Sequence
- MNRFKRESNSYVEEVFDASIVKYEPCDIGICSENRSYDVSGSVGDIMNHKNTSIKYEVQNDEEYHAVELNNKDIGFMDLSTVCKAEQDDIDIHYEDFKSKIVEKPVKWGLHQLSKNDVVSELKCNGDSHSGSKPFECKIGSQSLCYKSFLGATEEKLFHCKICSKVFATSGNLKRHERSHTEKTLYTCKVCSKTFTQSKSLKDHERIHTGEKPFHCKICSKTFTKSSNLTEHERIHTGEKPFHCKICSKTFTQSKSLKDHERIHTGEKPYHCKTCSKVFNQSSSLVAHERIHTGGKPFHCKICSKTFTQSGDLKVHERIHTGEKPFHCKICFKAFSQSSSLKRHERNHTELFGRIEEVIQGRTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00328540;
- 90% Identity
- iTF_00328540;
- 80% Identity
- iTF_00328540;