Basic Information

Insect: Chrysolina americana
Gene Symbol: Zfpm1
Assembly: GCA_958502065.1
Location: OY293413.1:83051757-83054879[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6.5 1.1e+03 2.3 0.6 3 23 8 28 6 28 0.93

2 15 0.003 0.53 12.8 0.3 1 23 561 584 561 584 0.91

3 15 0.00044 0.075 15.4 0.4 3 23 661 682 659 682 0.93

4 15 0.0081 1.4 11.5 1.4 1 23 690 712 690 712 0.98

5 15 0.00026 0.044 16.2 2.3 2 23 715 736 714 736 0.97

6 15 0.00027 0.047 16.1 1.4 1 23 742 764 742 764 0.97

7 15 8.1e-05 0.014 17.7 5.8 2 23 771 792 770 793 0.95

8 15 0.54 93 5.7 1.1 5 23 806 824 805 824 0.95

9 15 0.0079 1.4 11.5 2.6 3 23 831 852 830 852 0.97

10 15 0.54 93 5.7 0.1 2 23 868 888 867 888 0.96

11 15 0.00014 0.024 17.0 1.2 1 20 894 913 894 916 0.92

12 15 0.057 9.9 8.8 0.1 1 23 924 946 924 946 0.98

13 15 0.0016 0.27 13.7 2.9 1 23 952 974 952 974 0.97

14 15 6.7e-06 0.0012 21.1 2.5 1 23 980 1002 980 1002 0.98

15 15 0.0045 0.77 12.3 4.7 1 23 1008 1030 1008 1030 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6.5	1.1e+03	2.3	0.6	3	23	8	28	6	28	0.93
2	15	0.003	0.53	12.8	0.3	1	23	561	584	561	584	0.91
3	15	0.00044	0.075	15.4	0.4	3	23	661	682	659	682	0.93
4	15	0.0081	1.4	11.5	1.4	1	23	690	712	690	712	0.98
5	15	0.00026	0.044	16.2	2.3	2	23	715	736	714	736	0.97
6	15	0.00027	0.047	16.1	1.4	1	23	742	764	742	764	0.97
7	15	8.1e-05	0.014	17.7	5.8	2	23	771	792	770	793	0.95
8	15	0.54	93	5.7	1.1	5	23	806	824	805	824	0.95
9	15	0.0079	1.4	11.5	2.6	3	23	831	852	830	852	0.97
10	15	0.54	93	5.7	0.1	2	23	868	888	867	888	0.96
11	15	0.00014	0.024	17.0	1.2	1	20	894	913	894	916	0.92
12	15	0.057	9.9	8.8	0.1	1	23	924	946	924	946	0.98
13	15	0.0016	0.27	13.7	2.9	1	23	952	974	952	974	0.97
14	15	6.7e-06	0.0012	21.1	2.5	1	23	980	1002	980	1002	0.98
15	15	0.0045	0.77	12.3	4.7	1	23	1008	1030	1008	1030	0.97

Sequence Information

Coding Sequence: ATGGATTCAATCAACATTTGTTGTCCTGTTTGTACATTATTTTTGAGACCAGGCATAACCTTGAAGCAGCACCTGACGTCTCATCCCAAACAAAAGGTGATTGATGCTTTGGTTAAATTATCGGTAGCTGAAGAATTACCTAgtccaaaacaaaatgtatcACAACAGCTGTTGCAACCAACAAATAATATAGCAACAGCTGGGAGCAGTCAGATAAACACAGCTGTTGTCAACCACTCTTGGAACCAGACTCCTCAGGTCCAACTAGGAACTCCACCTCAAGTAAATCCTTCACATGGCAACCATGTGTTCATTTATCAACAAAGTATGAGTACAACCTCACCACAACCTCCAGTTTTACATGTCAACCCACTTTCTCAACAGTATGTCTATCCAACTTCTTTCAATCCATTGATGATGATGCCTTATGTTTATCAACAACAGCAGCAAGTGATACTTTCAAGTAATTCTTCCTTACCACCTCAAATTAAAGCATTATCATTTGATGCACCTAATACTGCCTTAGAATCGCAAGGTGATGAAGTTTCTGTTAGTGAAGATACAAGTGACACTCAGGAGTGTAGGATTGTTGAGGTACAAGAGAATGTTAAAGAAGCTCCAGAGGAAAATCCTGATGATGAAACCAAAACAGAAGAATCATCATTTAGTGAAACGATCACACttgtgaaaaaacataaaatatctaTAACTGAAGGTAATTTAGAAACCATGGAAGATTTTGAGAATGAAAGAATGGTTCTTAATGACATACCTCCTGATGATTATCATTCTGGAGAGGAAGAACAGTGTGATGATAGTTCAGATCATGTTGGTCACAATTCTAGCCAAATTGACCAAGAAGGTATAAGATCGTCATTATCTGAAATGAATCCTGATTGGAAATTAGAATCCGAATTGAGCAAAGCATGTCAGACTCAGATAGCAAGCCATTCTTCCCCCTCATCACAAGTTGTGGAAGAGGAACTAGTTTTGGAAAATGATAATACTTTTATTCAGGAAGATCAACCAGAATACTTCTATATGAACTCTCAAAACGCCGAATATGTTGAGCAGGAACCTAATGCTTATACTGGTCAACAAAGTACTGAGTCAGCACCTTTCTCAGCAGTGGAGAGTATAGAAAATTATGAACAGGCTGAACCAATTTACACTTCAGCTAATATTCTGCATGGTGATCATTTAGATTTTGTTAATTTAGACGACATAATCATTATTAACGAGTTTACTCCTAATCAAGTAGTTGCACAagtggaaaattttgaaaactcatCTCCTGAGAGACCCAGAGTGCTGATGACCATAGGAGAAATTCCAGACCATTCAAGGATAGATTATATGGAACAAAGGGACTTTGAAGAGAGCATGTCAAGAGGTAGTTCACAAGTCAACATCAGATCTGATGAAAGAATGCCTGCTAGAGGTGAACTGTCAGGACAGGAAAGCATTGGAGGTAACAGTGATATAACGTGGAACCGGATGCAGTATCAAGAAGGAAGTTCTCGTATGTCTCAATGGGGGGGTTGGGAGGCATCAGATAGTGATAGTGTGGATACACCTGCTGCACAGCAAAACTCCACTCAGGTATCCTATCAACAAGACGAATATGAAACTAAGAACAATACTCCAATTATTGTCAGTTGTTCAGGTCCTTCTCTGAACTTCAaatgtccaacttgtccaatgAGTTTTGCAACTTCTAAGGAAAGGAAAGAACATGAGCTGGAGGAACATTCTGAAAAATCAAAACTAAATCTTATAGGGAGCGAAATTGGCaagaagaaaataaagaaaCTTGTTTTGAAGATGAAACCAGAAAATGCTGAAGTTGAgcacaattttgataatgtcTTCACAAATAGATTGAAGCAAGAAAATATTACAGAAACACCTGAAaaggttcagttggaaacaactTTTAAAATAGATGATCCTTTGGAACCATTAGATCTTAAAACTATTTGTCCAATTTGTGACTATGTGTGCACAAATAACAAAGCCCTTAAGGTGCATAAAATGGAggctcataaaaaaaattcggcTGCCAAGCACAAATGTTTAACTTGTGGCGAATTATTTCCTAATGAGTACAAGTATACAGAACACCTTAAGGTACATCCTCTGGAGTGTAAACTATGTGGCAAGTTATTCTTTAGACGTCAAAATATGCGACTACACATGAAAAGACATTTGGGACTCAAACCATTCAAATGTGAAATATGTGAGAAGTCATTCATCACAAGACAGAAATATAATGAACATAGTAATATTCACACAGGCAATGCTCCTATCAAATGCAACATGTGTGACGAAAAATTCAAGAGACATTCTAATTTGGTTCAACATCGCAATCGTCaccattttcaactgaaaaagaaaatcaagGATTACATGTGTCAGTGCGGAGAAATATtccattcaaagaaaaaactgGCCTGGCACAAGGAAATTCATGATGCCAAGCCCAAGGCTTGCACCCAATGCAGTGAAAAATTTCTCCACATGTCCAGTTTAACAAGACATATGAGACGAGCACACAACGACAAATTCCTACCAGAAGATAAACGTCAAAACGAGAATGTGGAATGTCCAGTATGTAAGGGTACTTATTTGAGGTCTTCTCTTGATGTTCACATAAAGAGTCACAGTGGTGCTAGGCCGTTTTCTTGTGTGATGTGCAACAAAGTGTTTACCACCAAATGGAATCTCAAACTGCATAAGTGGACACATGCAAGTCGTATCTCCAAGCCCTTCAAATGTGACCAGTGCATAGGGGCTTTCATTAGAGAAACTGACTATATAGCTCATATGAATTCACATAAGAGCGTGCGACCATACACCTGCAACTACTGTGGTGCTCAGTTCATTAGAAAATATAACTGTATACGTCATGTGAAGGAACACGAGAATAATAAGACTTTTAGTTGTCCCATTTGTGCAAAATCTTTCCACAGGTCCTATTATTTGAAAGATCACATGAAAGTACACAGTGGCGATCGGCCACATCAATGTGGAGTTTGTGGAAAAACCTCCACGACAAAATCTAATCACAATAAACATACGCAAATTCATAACGCTAGAGAACCAGTaagtactgaaaattga
Protein Sequence: MDSINICCPVCTLFLRPGITLKQHLTSHPKQKVIDALVKLSVAEELPSPKQNVSQQLLQPTNNIATAGSSQINTAVVNHSWNQTPQVQLGTPPQVNPSHGNHVFIYQQSMSTTSPQPPVLHVNPLSQQYVYPTSFNPLMMMPYVYQQQQQVILSSNSSLPPQIKALSFDAPNTALESQGDEVSVSEDTSDTQECRIVEVQENVKEAPEENPDDETKTEESSFSETITLVKKHKISITEGNLETMEDFENERMVLNDIPPDDYHSGEEEQCDDSSDHVGHNSSQIDQEGIRSSLSEMNPDWKLESELSKACQTQIASHSSPSSQVVEEELVLENDNTFIQEDQPEYFYMNSQNAEYVEQEPNAYTGQQSTESAPFSAVESIENYEQAEPIYTSANILHGDHLDFVNLDDIIIINEFTPNQVVAQVENFENSSPERPRVLMTIGEIPDHSRIDYMEQRDFEESMSRGSSQVNIRSDERMPARGELSGQESIGGNSDITWNRMQYQEGSSRMSQWGGWEASDSDSVDTPAAQQNSTQVSYQQDEYETKNNTPIIVSCSGPSLNFKCPTCPMSFATSKERKEHELEEHSEKSKLNLIGSEIGKKKIKKLVLKMKPENAEVEHNFDNVFTNRLKQENITETPEKVQLETTFKIDDPLEPLDLKTICPICDYVCTNNKALKVHKMEAHKKNSAAKHKCLTCGELFPNEYKYTEHLKVHPLECKLCGKLFFRRQNMRLHMKRHLGLKPFKCEICEKSFITRQKYNEHSNIHTGNAPIKCNMCDEKFKRHSNLVQHRNRHHFQLKKKIKDYMCQCGEIFHSKKKLAWHKEIHDAKPKACTQCSEKFLHMSSLTRHMRRAHNDKFLPEDKRQNENVECPVCKGTYLRSSLDVHIKSHSGARPFSCVMCNKVFTTKWNLKLHKWTHASRISKPFKCDQCIGAFIRETDYIAHMNSHKSVRPYTCNYCGAQFIRKYNCIRHVKEHENNKTFSCPICAKSFHRSYYLKDHMKVHSGDRPHQCGVCGKTSTTKSNHNKHTQIHNAREPVSTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00329967;
90% Identity: iTF_00329967;
80% Identity: -